Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3159g00020 ATGGCTGATAATTCATCAAGCAATGGAAACAACGAAGTGGTTTTAAATGTAAACGGTGATGCCTCCAAAAAGTGTGACGGCATCGAAGAAGACTGCGTGCCATTTTTGCAGAAGGTGGTGACAGAGATGGTGGGGACGTACTTCTTGATATTTGCAGGATGTGCTTCGGTGGTTGTGAACCTTAACAACGACAAGGTGGTGACTCTTCCTGGGATTTCTATTGTTTGGGGACTCACTGTTATGGTATTGGTTTATTCCGTTGGACACATCTCTGGTGCTCATTTCAACCCAGCTGTCACACTTGCTCATGCTTCCACCAAAAGATTTCCCTGGAAGCAGGTGCCAGCATATATAGTAGCTCAGGTGATTGGATCCACACTTGCAAGTGGAACACTAAGACTTATATTCAGTGGAAAGGATGACCATTTTGCAGGAACACTTCCGGCTGGATCTAACCTTCAAGCTTTTGTGGTCGAATTCATAATAACTTTCTACCTAATGTTCATCATTTCTGGAGTTGCCACTGATAATAGAGCGATTGGTGAGTTGGCTGGGCTTGCAGTTGGGTCAACGGTACTGCTAAATGTGATGTTTGCCGGGCCAATCACTGGAGCATCAATGAATCCAGCAAGAAGCTTGGGACCTGCTATTGTGCATAGTGAATACAGAGGAATATGGATATACTTAGTCTCACCCATTCTGGGTGCTGTGGCTGGTACATGGGCCTATAATTTCATCAGATACACAAAGAAGCCAGTGCGTGAGCTCACCAAGAGTGCCTCTTTCCTCAAAAGAAAAAGAAATGGTGGAGCTGAGTGA 819 0.4493 MADNSSSNGNNEVVLNVNGDASKKCDGIEEDCVPFLQKVVTEMVGTYFLIFAGCASVVVNLNNDKVVTLPGISIVWGLTVMVLVYSVGHISGAHFNPAVTLAHASTKRFPWKQVPAYIVAQVIGSTLASGTLRLIFSGKDDHFAGTLPAGSNLQAFVVEFIITFYLMFIISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHSEYRGIWIYLVSPILGAVAGTWAYNFIRYTKKPVRELTKSASFLKRKRNGGAE 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3159g00020 272 SUPERFAMILY Aquaporin-like 34 257 IPR023271 -
Gabi3159g00020 272 Pfam Major intrinsic protein 33 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3159g00020 272 CDD MIP 37 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3159g00020 272 NCBIfam MIP family channel protein 42 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3159g00020 272 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3159g00020 272 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3159g00020 272 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3159g00020 272 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3159g00020 272 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3159g00020 272 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3159g00020 272 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Gabi3159g00020 272 Gene3D Glycerol uptake facilitator protein. 2 259 IPR023271 -
Gabi3159g00020 272 PANTHER AQUAPORIN NIP2-1 22 264 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3159g00020 Gabi-Chr3159 314728 316659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3159g00020 3 264 Major Intrinsic Protein MIP AT5G37810 55.762 7.40e-104 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3159g00020 K09874 - gmx:100812577 456.832