Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3159g00019 ATGGAGAAATTAAATACATCAATGGACGCATCAGCAAGTAGCTGGATATCTGATTTGCTTTTGGAGGAAAAGGATGATTGCAATTTGTTTCGACAATGCCACCAGGACTTGCTTGATGTTGAGGGTTTTCTATCGCACGACATAGTAAGTGCCCTGCAGCAACCTTTGTCTTCGGAAGGCTACTCTTGTTACACTTCCAATTCCGAAACTTTCAAGAATTCATCTACAGAAGAAACGAGTTTGGAGAGGCCCACCAAGCTGCTTGTAACGAATAGCTATAGTTGGAACTCGTCCACCATCATGGAACACTTTTCACCGAATCTTTCTCTCGTGTCCTTTCCTTCTTCTCCCACCTCCCAGATTCTGTCTTTTGAGAACTCCAACTCCAACTCATCCCCTGCCAACACCACCCTGTTTCATGGTTTTCATTGTACCTTAAACCCAAAACAGAACGAGGTTGTCTCAGTGTCACCGCCACAACCGCGAAATGTGAATTTCACGACTCAAACCCAAAAAGGGTCATCAAAAAAACAAAAAATTGAAACTAAAAACCCCCAAAGCCAAGGGACTGTGAGGTCTCCCACCAACGTTCAAGATCACATCATGGCCGAGAGAAAAAGAAGAGAGAAGCTCAGCCAGAGCGTAGTTGCTCTTGCAGCTCTTATTCCCGGCTTAAAGAAGATGGATAAGGTTTCAGTCCTTGGAGACGCTATTGAGTACGTGAAAAAGCTCCAAGAGCGTTTGAGACTGCTCGAAGAACAGCGCAACAAAAGAGCGGTAAATTCTATGGTTATAGTCAACAATGATTCCTCCTTATGTGAGAGCTTTGACGCTGCTAGTTGTTGTGAAGCACGCCCACACGTGAAAGCGAGAGTGTTAGAGAAGGACGTGCTGCTTCGGATCCACTGCCCCAAGCGAAAGGATATTTTGCCCAAATTACTGGTCGAGATTCAAAACCTTCGTCTCTTTGTTCTCAGTAGCAGTGTCCTACCTTTCGGGGATTCTATCCTTGACATAACCATCGTTGCTCAGATGGGCACAGGCTATGACTTGAGCATAAATGATCTTGTAAAAAAGATACGGGTGGCTACATTGAAATTCATGTCATAG 1110 0.4459 MEKLNTSMDASASSWISDLLLEEKDDCNLFRQCHQDLLDVEGFLSHDIVSALQQPLSSEGYSCYTSNSETFKNSSTEETSLERPTKLLVTNSYSWNSSTIMEHFSPNLSLVSFPSSPTSQILSFENSNSNSSPANTTLFHGFHCTLNPKQNEVVSVSPPQPRNVNFTTQTQKGSSKKQKIETKNPQSQGTVRSPTNVQDHIMAERKRREKLSQSVVALAALIPGLKKMDKVSVLGDAIEYVKKLQERLRLLEEQRNKRAVNSMVIVNNDSSLCESFDAASCCEARPHVKARVLEKDVLLRIHCPKRKDILPKLLVEIQNLRLFVLSSSVLPFGDSILDITIVAQMGTGYDLSINDLVKKIRVATLKFMS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3159g00019 369 PANTHER BHLH TRANSCRIPTION FACTOR 63 366 - -
Gabi3159g00019 369 Coils Coil 234 261 - -
Gabi3159g00019 369 Gene3D - 188 259 IPR036638 GO:0046983
Gabi3159g00019 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 258 IPR036638 GO:0046983
Gabi3159g00019 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 244 IPR011598 GO:0046983
Gabi3159g00019 369 MobiDBLite consensus disorder prediction 153 195 - -
Gabi3159g00019 369 SMART finulus 201 250 IPR011598 GO:0046983
Gabi3159g00019 369 Pfam Helix-loop-helix DNA-binding domain 199 245 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3159g00019 Gabi-Chr3159 272856 275230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3159g00019 83 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.415 1.12e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3159g00019 HLH 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3159g00019 - - gmx:100816551 356.681