Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3159g00018 ATGGCATCAACGGAGGAATCATGGAAAAACTGGTTGTGTGACTTGGAAGCAGAGGATTACAGTTTAGTCGATCAATCCGACACAAACGTTGTTGCTGGAAGTTTCCCATCTCATCATCATGAAATAGCCGCCACGCCACAAGAGGAGAACTTGCAAAGATCTTTCTCTGCCGATAGATACTGCTCTTACGCCGAAAACTCCAGCACCATGAGCAATTCCTCAGGGGATGATGATAACAACTTTGAGAGGCCTTCCAAGACTCTCAAGGTCGCCACTTCAAACTCTGCTAACACCGAGTACCTTCCACAAACAAAGGAATCTTCTCTCTCCTCCTACGTTCTTTCGTTTAACAATGTGAATCCAGCACCAATAATGAACATTGATTCGAGCTTGAAGCCAAAAGGTAAAGTTGTGAATCACGGTAAGTCTTTTCCCTCAAAGAAGGAACCTAGACGCAATATTCAGGAGGTCAAGAAGACTGGTTCGTTGGCTAGATCTCCTCACCAATCTCAAGATCACATAATTGCTGAGAGAAGGAGAAGAGAAAAGATTAGCCAGCAGTTCATAGCACTTTCAGCCCTTATTCCAGGCCTGAAAAAGATGGACAAGGCCTCTGTGCTAGGGGACGCCATAAAGCACGTGAAACAGCTTCAAGAACAGGTGAAGCTTCTTGAAGAGCAGACCAAAAGGAAAAGAGTAGAATCAGTTGTGTATGTTGAGAAATCTTGGCTCTCTGCAGATGAAGATGTCTCAGACACCTCCTCAAATTCTGGCGATGGAAACTCCTATGACCCTTCAAAAATAAATCGCTCGTTGCCAGAAGTTGAGGCAAGGGTGTCAGAGAAGAACGTGCTGATTCGAATCCACTGCGAGAAACAGAAGGGATTGTTCATGAACATACTCAAAGAGATAGAGAACCTTCGTCTATCAGTCATCAATAGTAATATCTTGCTTTTCGGGACCTCCATAGTGGACATAACCATCACAGCCGAGATGGATGATGAATTCAGTCTGAGCGTGAAGGAGCTGGCTAAAAACCTTCGAGTGGGACTATTGCAATTTATGTAG 1068 0.4438 MASTEESWKNWLCDLEAEDYSLVDQSDTNVVAGSFPSHHHEIAATPQEENLQRSFSADRYCSYAENSSTMSNSSGDDDNNFERPSKTLKVATSNSANTEYLPQTKESSLSSYVLSFNNVNPAPIMNIDSSLKPKGKVVNHGKSFPSKKEPRRNIQEVKKTGSLARSPHQSQDHIIAERRRREKISQQFIALSALIPGLKKMDKASVLGDAIKHVKQLQEQVKLLEEQTKRKRVESVVYVEKSWLSADEDVSDTSSNSGDGNSYDPSKINRSLPEVEARVSEKNVLIRIHCEKQKGLFMNILKEIENLRLSVINSNILLFGTSIVDITITAEMDDEFSLSVKELAKNLRVGLLQFM 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3159g00018 355 CDD bHLH_AtNAI1_like 168 242 - -
Gabi3159g00018 355 Coils Coil 207 234 - -
Gabi3159g00018 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Gabi3159g00018 355 PANTHER BHLH TRANSCRIPTION FACTOR 50 354 - -
Gabi3159g00018 355 FunFam Basic helix-loop-helix family protein 165 234 - -
Gabi3159g00018 355 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983
Gabi3159g00018 355 SMART finulus 174 223 IPR011598 GO:0046983
Gabi3159g00018 355 MobiDBLite consensus disorder prediction 133 152 - -
Gabi3159g00018 355 Gene3D - 167 238 IPR036638 GO:0046983
Gabi3159g00018 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 235 IPR036638 GO:0046983
Gabi3159g00018 355 MobiDBLite consensus disorder prediction 249 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3159g00018 Gabi-Chr3159 258073 259494 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3159g00018 11 355 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.901 1.36e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3159g00018 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3159g00018 - - gmx:100816024 383.645