Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3159g00017 ATGATGGAAATTGCGTCCACCAACTACTTGCCTGAACTTGGAATGGAGGATCACACCTTCTTTCATCAATATCCGATGGATTCTTTTGCATGCTCACTTGATGACTTTGACTTCCAATCTTTCTGCGGGTCCCCAGAGAGCAATTCCTCTTATCAGTATTTCAACTCCGAAAGCACACCAAATTGTTTCCCTGCTGAAAGTCCTAATCAATCCGTTAACCCAACAAGACCAAAGAAGAAGCTAAAGACATTCAGTGACTTTATGGCCCCAAAGGCTTCTTCCTCTTCCTCTTCATCCTCCCAACTTATTTCTTTTGAGCATTTCAATGCACCTTCTATTGCTTCCCACCAATTTCACAACCTGGATTCCGATTTGAAAATTTGCTTAAATAATGATAACCGAGCGAACCAGCTGGCCACGACCGCTAGGAACCCAACCCAAGCTCAAGAACACGTAATAGCCGAAAGAAAAAGAAGGGAAAAGCTCAGCCAGAGTTTCATCGCTCTATCAGCCATCGTTCCTGGACTCAAAAAGATGGACAAGGCTTCTGTGTTGGAAGATGCTATCAAGTATGTGAAACAACTAAAAGAGCGCGTGCAGACTCTGGAGGAGCAGTCAAAGAAAAAAGTTGGATCGGTAAAGAGATCTATTCTCTTCGCCAACGATGAAAATTCTGAGAGCCACTGCGAGCAGCCACACCCTGACATGGAAGTAATAGTTTCTGGTAAAGACGCACTCATCAGAATTCACTGCGACAAACAGAGTTGGCGTGCCGCTACCATTCTCAGCGAATTAGAAAAGAATCATCTCATTGTCCAGAGTTGCAGCTTTTTTCCCTTCGGGAATAACACTATTGCTGTAACTATTGTTGCTCAGATGAACAAGGAAAACTGCATTACAGCAAAGGATCTAATTGGAAGCCTAAGGCAGTTTATCTAA 939 0.4334 MMEIASTNYLPELGMEDHTFFHQYPMDSFACSLDDFDFQSFCGSPESNSSYQYFNSESTPNCFPAESPNQSVNPTRPKKKLKTFSDFMAPKASSSSSSSSQLISFEHFNAPSIASHQFHNLDSDLKICLNNDNRANQLATTARNPTQAQEHVIAERKRREKLSQSFIALSAIVPGLKKMDKASVLEDAIKYVKQLKERVQTLEEQSKKKVGSVKRSILFANDENSESHCEQPHPDMEVIVSGKDALIRIHCDKQSWRAATILSELEKNHLIVQSCSFFPFGNNTIAVTIVAQMNKENCITAKDLIGSLRQFI 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3159g00017 312 Coils Coil 185 212 - -
Gabi3159g00017 312 PANTHER BHLH TRANSCRIPTION FACTOR 25 310 - -
Gabi3159g00017 312 SMART finulus 152 201 IPR011598 GO:0046983
Gabi3159g00017 312 Gene3D - 136 209 IPR036638 GO:0046983
Gabi3159g00017 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Gabi3159g00017 312 CDD bHLH_AtNAI1_like 148 209 - -
Gabi3159g00017 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 207 IPR036638 GO:0046983
Gabi3159g00017 312 Pfam Helix-loop-helix DNA-binding domain 149 196 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3159g00017 Gabi-Chr3159 238480 240060 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3159g00017 142 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.486 4.79e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3159g00017 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3159g00017 - - gmx:100791810 402.905