Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3159g00015 ATGCGTATCCTTCTTCTGCTTCTGCACTTCCTCTATTTCCGTTTCAACTACACCATCGCCGAGCCTATCTCAGAGCACAGTGTCCTTCTCTCTCTCCGTGAAGCCATTACCGAAGCCACCCCATCTGTTCTCCCCTCCTGGAACGCCTCCACCACTTACTGTTTCTGGTACGGCGTCACCTGCAACGCCCGCCGCCACGTCATCGCTATTGACCTCACCGGGCTTGACCTCTCCGGCACAATCTCCGGCGACGTCGCTCATCTCCCATTCCTCTCCAACCTCTCCCTCGCCGCCAACAATTTCTCCGGCCCCATCCCTCCGTCGCTATCCGCCATCTCCGGCCTCCGCTTCCTCAACCTCTCCAACAATGGCTTCAACGGCACCTTCCCTTACGAGCTTTCCCAGCTCAAGAATCTTCAGGTCCTCGACTTGTACAACAACAACTTGACCGGAGTGCTCCCTCTCACCGTCACCCAGATGCCGAATCTCCGGCATTTGCATCTCGGCGGCAACTTCTTCTCCGGCCAGATCCCGCCGGAGTACGGGACTATGAAACGCTTGGAGTACCTCGCAGTTTCCGGCAACGAGCTCGACGGAGCCATTCCGCCGGAGATCGGAACCTTAACCAGTCTCCGGGAGCTCTATATCGGATACTTCAACATCTACGAGGGCGGTATTCCACCGGAGATTGGGAACTTGTCGGAATTGGTGAGGCTTGACGCCGCCAACTGTGGAATATCCGGTGAGATACCGCCGGAGATGGGGAAGCTACAGAAACTGGACACTCTGTTTCTTCAGGTGAATGCGCTTTCGGGGTATCTGACAACGGAAATTGGAAACTTGAAGAGCCTCAAGTCGATGGATTTGTCTAACAACATGCTTACGGGTGAGATTCCGGTGAGTTTTGGTGAGCTGAAGAACCTGACGCTTCTGAACCTGTTCAGGAACAAGCTTCACGGAGCGATTCCTGAGTTCATTGGGGAGCTTCCGGCGTTGGAGGTGGTTCAACTGTGGGAGAACAACTTCACAGGGAGCATACCTGAGAGTTTGGGGAAGAACGGTAGGCTCAAGAGTCTTGATCTTTCTTCAAACAAGTTAACTGGGACTCTTCCACCTCACCTATGCTATGGGAATCGTCTTATGACTCTGATAGCTTTGGAGAACTTCCTCTTTGGTCCAATCCCTGAATCCCTTGGTAGGTGCAAATCTCTTGAACGGATTCGAATGGGTGACAACTTTTTCAATGGCTCCATTCCGAAGGGCCTTTTTGGACTTCCCCAACTCACCCAGGTTGATCTTCAGGACAATTATCTCTCTGGCCAGTTTCCTGAAGCCGATGCTTTTTCTCTGAATCTTGGTCAGATTACTCTCTCCAACAACCAACTTTCTGGGCCTTTGCCTCCTTCGATTGGTAACTTCTCCAGCATGCAAAAGCTCCTTCTTGATGGCAACAAGTTCTCGGGTCCAATCCCCCTTCAGATTGGTAGGTTACAACAGCTCTCAAAGATTGATTTTAGCCACAACAAACTCTCGGGTCCTGTTGCCTCAGAGATCAGTCAGTGCAAGTTGTTAACTTATATTGATCTTAGCCGCAACGAGCTCTCTGGTGAGATCCCAAATGAGATTACCAGTATGCGGATATTGAATTACTTGAATCTTTCGAGAAATCATCTAGTTGGTGCCATTCCCGCGTCAATATCCTCAATGCAAAGCTTAACTTCTGTTGATTTTTCATATAACAATCTCTCTGGTTTGGTTCCTGGGACCGGTCAATTCAGTTACTTCAACTACACGTCATTCCTGGGCAACCCTGATCTTTGTGGCCCGAATTTGGGTGCTTGCAAGGATGGGGTTGCCAATGGTGGTCACCAGGCTCATGCTAAAGGACCACTCTCTTCTTCTTTGAAGCTCTTACTGGTTATTGGGTTGCTTGCATGCTCCATTGTGTTTGCTGTTGCAGCAATATTTAAGGCTCGGTCACTGAAGAAGGCCAGTGAGGCTCGTGCATGGAAATTGACTGCGTTCCAACGTTTGGACTTCACGGTTGATGATGTTTTGGATTGCTTGAAGGAGGACAACATAATAGGGAAAGGAGGTGCTGGCATTGTCTATAAGGGAGCAATGCCCAATGGGGATCTAGTTGCCGTGAAAAGGCTTCCGGGTATGAGCAGAGGCTCTTCCCATGATCATGGATTCAATGCAGAGATTCAGACATTGGGGCGAATCCGCCACAGGCACATTGTTAGACTGTTGGGTTTCTGTTCAAATCATGAGACAAATCTTTTGGTCTATGAATACATGCCCAATGGAAGTTTAGGTGAAGTTCTTCATGGAAAGAAAGGGGGTCATTTGCATTGGGACACAAGGTATAAAATTTCTGTGGAGGCTGCAAAGGGGCTTTGCTATCTACACCATGATTGTTCGCCACTTATCGTTCATCGAGATGTGAAATCAAACAACATCCTTCTTGATTCTAATTGTGAAGCCCATGTTGCTGATTTTGGGCTTGCCAAGTTCCTGCAAGATTCTGGAACATCCGAATGCATGTCTGCTATTGCAGGTTCATATGGATACATAGCTCCAGAGTATGCATACACATTGAAAGTTGATGAGAAAAGCGATGTGTACAGCTTTGGTGTGGTTCTTTTAGAGCTTATAACTGGCAGGAAACCAGTTGGAGAATTTGGTGACGGTGTGGACATTGTGCAATGGGTGAAGAAAATGACGGATTCTAACAAGGAAGGAGTTCTAAAAGTTCTTGATCCCAGACTTCCCTCAGTTCCCCTTCACGAGGTGATGCATGTTTTCTATGTAGCCATGCTTTGTGTTGAAGAACAGGCAGTGGAGAGACCAACTATGCGTGAAGTTGTTCAAATTCTGACAGAGCTTCCAAAACCACCTGGCTCTAAACAAGAAGACTTAACAATTACGGAATCCACTCTGTCATCATCAAACGCTTTAGAATCTCCAGCCACAGCCTCTAAAGATCATCAACATCCTCCTCAATCCCCGCCACCCGATCTTCTTAGCATTTGA 3036 0.4835 MRILLLLLHFLYFRFNYTIAEPISEHSVLLSLREAITEATPSVLPSWNASTTYCFWYGVTCNARRHVIAIDLTGLDLSGTISGDVAHLPFLSNLSLAANNFSGPIPPSLSAISGLRFLNLSNNGFNGTFPYELSQLKNLQVLDLYNNNLTGVLPLTVTQMPNLRHLHLGGNFFSGQIPPEYGTMKRLEYLAVSGNELDGAIPPEIGTLTSLRELYIGYFNIYEGGIPPEIGNLSELVRLDAANCGISGEIPPEMGKLQKLDTLFLQVNALSGYLTTEIGNLKSLKSMDLSNNMLTGEIPVSFGELKNLTLLNLFRNKLHGAIPEFIGELPALEVVQLWENNFTGSIPESLGKNGRLKSLDLSSNKLTGTLPPHLCYGNRLMTLIALENFLFGPIPESLGRCKSLERIRMGDNFFNGSIPKGLFGLPQLTQVDLQDNYLSGQFPEADAFSLNLGQITLSNNQLSGPLPPSIGNFSSMQKLLLDGNKFSGPIPLQIGRLQQLSKIDFSHNKLSGPVASEISQCKLLTYIDLSRNELSGEIPNEITSMRILNYLNLSRNHLVGAIPASISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPNLGACKDGVANGGHQAHAKGPLSSSLKLLLVIGLLACSIVFAVAAIFKARSLKKASEARAWKLTAFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMPNGDLVAVKRLPGMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKISVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNCEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGEFGDGVDIVQWVKKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPGSKQEDLTITESTLSSSNALESPATASKDHQHPPQSPPPDLLSI 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3159g00015 1011 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 658 766 - -
Gabi3159g00015 1011 Gene3D Ribonuclease Inhibitor 23 220 IPR032675 -
Gabi3159g00015 1011 SMART serkin_6 689 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3159g00015 1011 ProSiteProfiles Protein kinase domain profile. 689 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3159g00015 1011 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 226 962 - -
Gabi3159g00015 1011 MobiDBLite consensus disorder prediction 964 1011 - -
Gabi3159g00015 1011 Pfam Protein tyrosine and serine/threonine kinase 691 960 IPR001245 GO:0004672|GO:0006468
Gabi3159g00015 1011 MobiDBLite consensus disorder prediction 972 998 - -
Gabi3159g00015 1011 SUPERFAMILY L domain-like 298 614 - -
Gabi3159g00015 1011 Gene3D Ribonuclease Inhibitor 331 618 IPR032675 -
Gabi3159g00015 1011 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 767 977 - -
Gabi3159g00015 1011 ProSiteProfiles Leucine-rich repeat profile. 138 159 IPR001611 GO:0005515
Gabi3159g00015 1011 SMART LRR_typ_2 281 305 IPR003591 -
Gabi3159g00015 1011 SMART LRR_typ_2 160 182 IPR003591 -
Gabi3159g00015 1011 SMART LRR_typ_2 136 159 IPR003591 -
Gabi3159g00015 1011 SMART LRR_typ_2 497 521 IPR003591 -
Gabi3159g00015 1011 SMART LRR_typ_2 354 377 IPR003591 -
Gabi3159g00015 1011 SMART LRR_typ_2 184 208 IPR003591 -
Gabi3159g00015 1011 SMART LRR_typ_2 569 592 IPR003591 -
Gabi3159g00015 1011 SMART LRR_typ_2 425 450 IPR003591 -
Gabi3159g00015 1011 SMART LRR_typ_2 329 353 IPR003591 -
Gabi3159g00015 1011 Gene3D Transferase(Phosphotransferase) domain 1 767 981 - -
Gabi3159g00015 1011 Gene3D Ribonuclease Inhibitor 221 321 IPR032675 -
Gabi3159g00015 1011 PRINTS Leucine-rich repeat signature 497 510 - -
Gabi3159g00015 1011 PRINTS Leucine-rich repeat signature 356 369 - -
Gabi3159g00015 1011 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Gabi3159g00015 1011 Pfam Leucine Rich repeats (2 copies) 137 177 IPR025875 -
Gabi3159g00015 1011 Pfam Leucine Rich Repeat 355 375 IPR001611 GO:0005515
Gabi3159g00015 1011 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 82 325 - -
Gabi3159g00015 1011 Gene3D Phosphorylase Kinase; domain 1 655 766 - -
Gabi3159g00015 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Gabi3159g00015 1011 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 333 618 - -
Gabi3159g00015 1011 SUPERFAMILY Protein kinase-like (PK-like) 682 960 IPR011009 -
Gabi3159g00015 1011 SUPERFAMILY RNI-like 70 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3159g00015 Gabi-Chr3159 208211 211785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3159g00015 12 990 Receptor kinase-like Gene Family AT5G65700 79.108 0.0 1583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3159g00015 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3159g00015 - - ccaj:109800149 1715.66