Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3159g00004 ATGGAGCGTCGCAGAATCGGAATTGGGATGGTCCTGGCAGTGTTCTATGGTGTAGATCCCTTACATGTAGGTAGTCAAACAGGTGAGTTTGGAGAAGCATTTGATAAACTTTTGAACAGAATTTCTCCGGAGGAAGACCAAGTGCAGAGATGGAGGATGGCGCTTCGTGACGCTAGCGGCATTCCAGGATTTAATGGAAGTAAGAGTGAAGATATCGGGAATCTAGTTGGAGTTGTTACTCGTCTGCGGGATAAGATATCCTTGTTCGGCTTTGCTGAGCAATCAGTGGGAGTAGAATCTCGTGTACAAGAAGTGATTCAACTATTGAACAGCAAAAAATCAGAACATCCTCTAGTTCTAGGGATATGGGGGATAGGAGGGATTGGTAAAACAACAGTTGCCAAAGCCATCTATAAACAAATCGGTCTCAATTTTGATGATAGCAGGTTCATCCTAAATGTTAGATCAGGTTGGGAACAAAATAATGGCCAAGCTCCTTTACAAGAATGGCCTCTTTCTGGTATCTACAAAAAGACAAAAATAAAGATGGGTACAATTGAAGCAGAAATAGTGATATTAAAGGAAAACATTCGCCCAAAAAAATTACTTCTTGTGCTTGACGATGTGAATAAATTTGACCAATTGAAAGCTTTGTGTGGAAGTCGTGAATGGTTTGGTCCTGGAAGTGTAATAATCATCACAACAAGATATGAACATCTACTTCTTCAACTTGGAGTTGACCATGCACATAGAATGAAAGAAATGGACAAAAATGAATCTCTTGAGCTTTTTAGTTGGCATGCGTTCAAACAAGCAAGTCCTACTAAACGTTTTGAGGGCCTTTCTAATGTTATAGTTGAATATTCTGGGGGATTCATGCTAGTTCTTCAAGTCCTTGGGTCCTTTTTATTTTCTAAAGGAAAAAAGGAGTGGAATAGTGCATTGGAAAAACTCAAAATGATTCCCCACGATGATGTATTAAGCAAACTCAAAATTAGTTTTGATGATTTAAGGGATGAAGTAAAAAAAATATTCCTTGATATAGCTCTTTTCTTTATTGGGATGGTTCAAGGTGATGTAGTGAAGATATTAAATGACTCTGGGCTTTCTGCAAAATTTGGAATTAGTGTCCTCGTCCAAAAAGTCCTTGTAACTGTTGACCAGGAGTACAGGCTTGGAATGCATGATATGCTACGAGACATGGCAAGAGAAATTATTAAGAAGGAATCACGGATTCAGCCTGAGCCAAGGATATTCGAATATGATGTGTTCTTGAGTTTCAGAGGCAAAGACACTCGTGCATCATTCACTTCTCATCTATGTACCTCTCTTCAAAATGCCGCAATTCGTACTTTTAGGGACGATGATGAGATTCGAAGGGGAGATCAGATCAAAATCTCATTGTGGCAAGCAATCAGAATGTCTAAAATTATTGTCATTGTTTTGTCTAGAAATTATGCTAATTCAAGATGGTGTATGGAAGAGTTAGAGTTCATAATGGAAAATTGCAGAACCAAGGGTCAGGTGGTTGTACCTGTGTTCTACGGCGTAGATCCCTCAGAAGTACGTAATCTGACAGGTGAGTTTGGTGAAGCTTTTAAAGATCTTAAAAGTAGAATCTCAATGGATGCAAACCGGGAGAAGAATTGGAGGAAAGTGCTCCTTGAAGTTGGTGGCATCGCAGGATTTGTCGTCATAGATTCCAGGGATGAAACTGAAGATATCAGGAATATAGTTGAAAGTGTTACTGGTTTGCTAGACAACACGGATTTGTTTGTTGCTGAACATCCGGTGGGAATAGAATCTCGGGTGCAAGATGTGATTCAACTATTGAACAACCAACAAACAAAACATCCTCTACTTCTAGGCATATTGGGGATGGGAGGGGTTGGCAAAACAACCGTTGCCAAAGCCATTTATAATGAAGTTGGTCGCAATTTTCGGGCTAAGAGCTTCCTCCTAAATGTCAGGGAAGATTGGGAAAAAAGTAATGGACAAATTTCTTTACAACAACGGCTTCTTTCTGATATATACAAAACAACAAAAGTGAAGATAGATACAACTGAATTAGGAAAAGTGGAATTACAAAAGAGACTTAGCCAGAAAAGGATATTTCTTGTGCTTGACGATGTAGATAAATTGGACCAATTGAATGCTTTGTGTGGAAGTCGTAAATGGTTTGGTAGGGGAAGCAGAATAATCATCACAACAAGAGATAAACATCTACTTAGTGTGCTTAGAGTTGACCGCCTATACAGAATGAAAGAAATGGACAAAAATGAATCTCTTGAGCTTTTTAGTTGGCATGCGTTCAAGCAAGCAAGTCCTAATGAAGGTTTTGCTAACATTTCTAGAGATGTTGTTAAATATTCTGGGGGATTGCCGCTAGCTCTTCAAGTACTTGGATCCTTTTTGAATTCTAGGGGGGTAAGGGACTGGGAGAGTGCATTGGAAAAACTCAAAATCATTCCCAATCATGAAATACTGAGGAAGCTTAAAATAAGTTTTGATGGTTTAAATGATGATAAAGTGAAAGAAATATTCCTTGATATAGCTTTTTTCTTTATTGGGAAGGATCGAGATGATGTAATTGAGATATTAAATGACTGTGGGCTTTTTGCAGAAATTGGAATAAGCGAACTCGTAGAAAAAAGTCTTGTAACTGTTAACAATAAGAACAGGCTCGGAATGCATGATTTGCTGCGAGACATGGGAAGAGAAATCGTTCGGGAAAAATCACCAGAGTTGGCCGAGGAGCGCAGTAGGGTATGGCTCCAAGAAGATGTGCTTGATGTGTTATCAAAAGATACAGGAACGATAGCTGTTAAGGGACTGACTTTGAAGTTGCCAAGGATGGAAACAACAACTGGTTTGAAAACCAAAGCATTTGAGAAGATGAAGAGACTGAGATTGCTTCAACTTGCTGGCATACAACTTGATGGTGATTATAAATATCTCTCACAAGATCTTAGATGGCTTTGCTGGGATGGATTTCCTTCAATATATACACCTGAAGACTTTCATCAAGGAAGTTTAGTTGCCATTGAGTTAAAATATTCCAATATGCAACAGGTGTGGATGAAGTCCAAGATGCTGACGAAGCTGAAAATTCTCAATCTCAGTCATTCTCCTAACTTGAGAGAAACCCCAGACTTTTCGAAGATACCAAATCTGAAGAAGTTAATACTAGGGTTAATACTCAAAGATTGTCCACGTTTGTCTTCGGTTTCTGATACTATTGAACATCTCAAAGAAATTCTTCTGATAAATTTGAAAGACTGTACAGGCCTTAGTACACTTCCAAGAAGCATCTATAAGTTAAAGACATTAAAAATTCTCATTCTGTCTGGATGTTCAAAAATTGACATGTTGGAAGAGGACTTGGAACAGATGGAATCTTTAACCACCCTGATTGCAGATAAGACTGCTATAAAAAGAGTGCCCTTTTCAATTGTGAGATCAAAAAGCATTGCATATATTTCATTGTGTGGCTATAAAGGATCCTCACGTGATGTGTTTCCATCTCTTATATGGTCTTGGATGTCTCCAACAAACATTGTCTTATCCCAAGTTCAAACATCTGCGGGCATGTCATCTCTAGCTTTCTTAGATGAACAAAATAGTAGTTTCCATGTTCAATCATCTACTCTCAAAGACCTTCAGAAGCTTCAACGTCTTTGGGTGGAGTGCGACTCAGAAGTTCAACTAAATGAAACTGTAGAAAGAATTTTGGATACTTTAAAAACCACAAATTACGAGGAGTTGGAAGCAATGCCAAGCACATCACATGTATCAAATATGAAGACTTCTGCATTAATTGTTTGTCACAGTCAAGCTCGCATTTCAGGATCAAAAAATTCCCTGACATCTCTTTTAATTCAAATGGGAATGAACTGCAATGTCACCAATATTCTTAGAGAAAGCATTTTACAGAAAATGTCTCCCATTGGGCCCGTTTTCCTCCCTAGTGACAATTATCCTGATTGGTTAGCCTTCAGTGGTGAAGGTTCTTCTGTAGTTTTCGATGTCCCTCAAGTGAAGGAGCGTAACTTGAAGACAATCATGTGCCTTGTCTATATTTCTTCCCCAGACAGTATGACACCAGAAGTCCTTAAAAATATGTTGGTGATAAATTACACAAAGAACACCATTCAGCTCTACAAGAGAGACGCATTAACCCCCTTTGAAGACGAGGAGTGGCTGAGAGTAGTATCAAATATAGAACCGGGTAACAAAGTGAAGGTTGTTCTTGTTTTTGAGAACAGATACATTGTGAATTATACAACAGTTTTTCTCATATATGGTGAACCAATTAACGAAAAATTGGAGCACTGCCATACACCAGATAAAAATGCTGTTGTTTCTGGTGGTGATGAAAATAGTATAAGCAAGGAGAATTCAGATCCCCCCGCTCAAGCTGAAATGTTTTTTGGAAATCGACAAAGGAAGAAGGGAAAGCAGATAAACCAAGAAACAAATAATGCAATTGTAAGTTTATCTTTATAA 4506 0.3844 MERRRIGIGMVLAVFYGVDPLHVGSQTGEFGEAFDKLLNRISPEEDQVQRWRMALRDASGIPGFNGSKSEDIGNLVGVVTRLRDKISLFGFAEQSVGVESRVQEVIQLLNSKKSEHPLVLGIWGIGGIGKTTVAKAIYKQIGLNFDDSRFILNVRSGWEQNNGQAPLQEWPLSGIYKKTKIKMGTIEAEIVILKENIRPKKLLLVLDDVNKFDQLKALCGSREWFGPGSVIIITTRYEHLLLQLGVDHAHRMKEMDKNESLELFSWHAFKQASPTKRFEGLSNVIVEYSGGFMLVLQVLGSFLFSKGKKEWNSALEKLKMIPHDDVLSKLKISFDDLRDEVKKIFLDIALFFIGMVQGDVVKILNDSGLSAKFGISVLVQKVLVTVDQEYRLGMHDMLRDMAREIIKKESRIQPEPRIFEYDVFLSFRGKDTRASFTSHLCTSLQNAAIRTFRDDDEIRRGDQIKISLWQAIRMSKIIVIVLSRNYANSRWCMEELEFIMENCRTKGQVVVPVFYGVDPSEVRNLTGEFGEAFKDLKSRISMDANREKNWRKVLLEVGGIAGFVVIDSRDETEDIRNIVESVTGLLDNTDLFVAEHPVGIESRVQDVIQLLNNQQTKHPLLLGILGMGGVGKTTVAKAIYNEVGRNFRAKSFLLNVREDWEKSNGQISLQQRLLSDIYKTTKVKIDTTELGKVELQKRLSQKRIFLVLDDVDKLDQLNALCGSRKWFGRGSRIIITTRDKHLLSVLRVDRLYRMKEMDKNESLELFSWHAFKQASPNEGFANISRDVVKYSGGLPLALQVLGSFLNSRGVRDWESALEKLKIIPNHEILRKLKISFDGLNDDKVKEIFLDIAFFFIGKDRDDVIEILNDCGLFAEIGISELVEKSLVTVNNKNRLGMHDLLRDMGREIVREKSPELAEERSRVWLQEDVLDVLSKDTGTIAVKGLTLKLPRMETTTGLKTKAFEKMKRLRLLQLAGIQLDGDYKYLSQDLRWLCWDGFPSIYTPEDFHQGSLVAIELKYSNMQQVWMKSKMLTKLKILNLSHSPNLRETPDFSKIPNLKKLILGLILKDCPRLSSVSDTIEHLKEILLINLKDCTGLSTLPRSIYKLKTLKILILSGCSKIDMLEEDLEQMESLTTLIADKTAIKRVPFSIVRSKSIAYISLCGYKGSSRDVFPSLIWSWMSPTNIVLSQVQTSAGMSSLAFLDEQNSSFHVQSSTLKDLQKLQRLWVECDSEVQLNETVERILDTLKTTNYEELEAMPSTSHVSNMKTSALIVCHSQARISGSKNSLTSLLIQMGMNCNVTNILRESILQKMSPIGPVFLPSDNYPDWLAFSGEGSSVVFDVPQVKERNLKTIMCLVYISSPDSMTPEVLKNMLVINYTKNTIQLYKRDALTPFEDEEWLRVVSNIEPGNKVKVVLVFENRYIVNYTTVFLIYGEPINEKLEHCHTPDKNAVVSGGDENSISKENSDPPAQAEMFFGNRQRKKGKQINQETNNAIVSLSL 1501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3159g00004 1501 MobiDBLite consensus disorder prediction 1453 1472 - -
Gabi3159g00004 1501 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 421 1261 IPR044974 GO:0006952
Gabi3159g00004 1501 SMART AAA_5 116 256 IPR003593 GO:0016887
Gabi3159g00004 1501 SMART AAA_5 618 761 IPR003593 GO:0016887
Gabi3159g00004 1501 Pfam NB-ARC domain 99 320 IPR002182 GO:0043531
Gabi3159g00004 1501 Pfam NB-ARC domain 601 821 IPR002182 GO:0043531
Gabi3159g00004 1501 Pfam TIR domain 421 582 IPR000157 GO:0007165
Gabi3159g00004 1501 Pfam TIR domain 10 70 IPR000157 GO:0007165
Gabi3159g00004 1501 SUPERFAMILY "Winged helix" DNA-binding domain 325 412 IPR036390 -
Gabi3159g00004 1501 Gene3D - 417 590 IPR035897 -
Gabi3159g00004 1501 MobiDBLite consensus disorder prediction 1454 1468 - -
Gabi3159g00004 1501 ProSiteProfiles TIR domain profile. 419 557 IPR000157 GO:0007165
Gabi3159g00004 1501 FunFam Disease resistance protein (TIR-NBS-LRR class) 417 588 - -
Gabi3159g00004 1501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 348 IPR027417 -
Gabi3159g00004 1501 Gene3D - 254 338 IPR042197 -
Gabi3159g00004 1501 Gene3D - 756 840 IPR042197 -
Gabi3159g00004 1501 PRINTS Disease resistance protein signature 791 805 - -
Gabi3159g00004 1501 PRINTS Disease resistance protein signature 698 712 - -
Gabi3159g00004 1501 PRINTS Disease resistance protein signature 621 636 - -
Gabi3159g00004 1501 PRINTS Disease resistance protein signature 1105 1121 - -
Gabi3159g00004 1501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 589 851 IPR027417 -
Gabi3159g00004 1501 Gene3D - 1 87 IPR035897 -
Gabi3159g00004 1501 SUPERFAMILY L domain-like 897 1230 - -
Gabi3159g00004 1501 Gene3D Ribonuclease Inhibitor 934 1316 IPR032675 -
Gabi3159g00004 1501 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 64 IPR035897 -
Gabi3159g00004 1501 Gene3D - 591 750 IPR027417 -
Gabi3159g00004 1501 Gene3D - 89 247 IPR027417 -
Gabi3159g00004 1501 SUPERFAMILY Toll/Interleukin receptor TIR domain 419 563 IPR035897 -
Gabi3159g00004 1501 SMART till_3 420 560 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3159g00004 Gabi-Chr3159 108667 132715 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3159g00004 45 417 WRKY Transcription Factor Family AT4G12020 28.571 2.70e-37 152