Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3159g00002 ATGTCTTTATCCTCTCAAATGGGTCTTGATCAGGATGCCAGTAACTCAGGCCTTCACCTTGTCCTCGGATTATCTTTGACTGCTACTACAAAGGAAACCACCATTTCACCTCCACCCATCAAGCCTGATGATCATCATCTTTGTCTTAAGCCAACGCCAATGAAGTCCTATTCCTCAAATGAACCGTCTTTAACATTGGGTCTCTCCGGTGAGTGTTACCAGCAGCAGGTGGCCAAGCAAGTGCCCAAAAATAATCATGGGAACAAAGTTTATTATGAGGACCCTCTTGACTTGTCTAGACAGACTTCACCTCACAGCGTTGTTTCATCTTTCTCCAGTGGGAGAGTGGTCAAGAGGGAGAGAGATCTTAGCTGTGAAGAGGTAGAGGTAGAAGCAGAAGAGAGGGTTTCTTCAAGAGTCAGTGACGAAGATGAAGACGTCATGAATGCAAGAAAGAAACTCAGGCTTACCAAAGAACAATCTGCACTGCTAGAAGAGAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGGGAGTTAAATCTACGGCCTCGACAAGTTGAAGTTTGGTTCCAAAATCGGAGAGCCAGAACAAAGCTGAAGCAGACGGAGGTGGACTGCGAGTTCTTGAAGAAATGTTGTGAAACTTTGACAGATGAGAATAGACGGTTAAAGAAGGAGCTGCAAGAACTGAAGGCACTGAAACTAGCTCAGCCCTTGTATATGCCTATGCCTGCGGCTACCCTCACCATGTGTCCCTCTTGCGAGAGGCTTGGTGGAGTGAGTGACAGCGGTTCCAATAAGAGTCCCTTCTCCATGACCATGGCTCCCAAGCCTCACTTCTACAATCCATTCGCCAATCCTTCCGCAGCATGTTGA 897 0.4671 MSLSSQMGLDQDASNSGLHLVLGLSLTATTKETTISPPPIKPDDHHLCLKPTPMKSYSSNEPSLTLGLSGECYQQQVAKQVPKNNHGNKVYYEDPLDLSRQTSPHSVVSSFSSGRVVKRERDLSCEEVEVEAEERVSSRVSDEDEDVMNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGVSDSGSNKSPFSMTMAPKPHFYNPFANPSAAC 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3159g00002 298 SMART halz 207 250 IPR003106 GO:0006355|GO:0043565
Gabi3159g00002 298 SUPERFAMILY Homeodomain-like 146 208 IPR009057 -
Gabi3159g00002 298 ProSitePatterns 'Homeobox' domain signature. 182 205 IPR017970 GO:0000981|GO:0006355
Gabi3159g00002 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 20 280 - -
Gabi3159g00002 298 Coils Coil 213 243 - -
Gabi3159g00002 298 FunFam Homeobox-leucine zipper protein 18 134 212 - -
Gabi3159g00002 298 Pfam Homeobox associated leucine zipper 207 241 IPR003106 GO:0006355|GO:0043565
Gabi3159g00002 298 SMART HOX_1 149 211 IPR001356 GO:0003677
Gabi3159g00002 298 Pfam Homeodomain 151 205 IPR001356 GO:0003677
Gabi3159g00002 298 CDD homeodomain 151 208 IPR001356 GO:0003677
Gabi3159g00002 298 ProSiteProfiles 'Homeobox' domain profile. 147 207 IPR001356 GO:0003677
Gabi3159g00002 298 Gene3D - 155 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3159g00002 Gabi-Chr3159 59010 60620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3159g00002 7 298 Homeobox Transcription Factor Family AT4G37790 59.150 4.46e-95 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3159g00002 Homeodomain 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3159g00002 K09338 - gmx:100795135 442.195