Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3158g00052 ATGGCGAACGGTACGGATTCGGAGCGGTTCGTGGTGCTTTCTGGGGTCCGGACGGGTCTCAAGAGAGAGTTTGCCTTCGCCATGAAGGCTCAGTCTGAGATCTGTGGCTCTCTCGGTCGAACCCGGTCCGGCAAGAACCGGAATGTGGTTCAAGTTCTGGACCGTCCGGTTCGAAAGAGGTCCAGAGAGTCCGGTTCATTGGAGGCCAAGAACGATAACCCGAATGGTCTGGTTAAGACTGATGAGTATGTGGGTGATGCTATGAGCGAGGAGGAGGCAAAAAGTGACGTGGTGGACCTTGAGGAACCCAAAAACCAAGTAGAAGAATCGCAGGAAAAGAGGGAAGAACTCGAGGGTGAAGCTCCAATGGGGGCTTCTGAAGAGGAACAGAAGAGTGATGATGATGTTGTGGTTGAAAGAGGGAGCGAGGATGAACCTAAAACTGGTAATCTATTGGAGTGTTCGAAGGAAGAGGTAATGGATGCAATGGCACGAGAGGGAGAGACATGTTCTCTTAAGGAAGAAGGGGTTATTGGCAATGATTGCAAGGTGAAGGGTGCTTCTGTTGTGAAGCTGCCAAGGAGGTTCACGCGATCAACACTGAAGGAAAAGGTGACAAATGATGAAAAGGTGGCAAATGATGAGGGAGATGGTAGTGGCAAAGGTGTTGAAAATGGTGATGGTGTTAAGAAGGATATTGAGGTTGGCTTGGTAATCAAAACCCCAGCTCAAGTAAAAAAGTCAAAGACTTCTACCGGGAAGAAGTTCCCTACGAAGCTGAAGGACCTTCTAGCCACAGGGATTCTTGAGGGACTATCTGTGAATTATATCCGCGGCGTGAAGGCACGAAGGCCTGGTGAAACAGGGCTTAGGGGAGTGATTAGTGGCAATGGGATTGTGTGCTATTGTGAAAATTGTAATGGGGTTGAGGTTGTGACACCCACTGTGTTTGAACTGCATGCTGGTAGTTCAAACAAACGCCCCCCAGAGTACATTTACCTTGAGAATGGGAATACTCTCCGTGAAATCATGAATACGTGTTTGAATGTTCCGGTAGATACCATGGAGGAAGCTGTCCAAAAGGTCCTTGGTGGCTTCACTATGAAGAAATCTAACTTTTGTTTTAGATGCAGAGTTGACAATGTTGTGTCAAGACTATTATGCATTTCATGCATGGAGCTGAAGAATTGTCAGCCTAGCCCCGCTCAAACACCTGAGACTAGCAATAGCTGTGATTCAGTAGCTGTTCAGTCCAGATCCCCAGAACCTGTTGTGATTCCGAAATCATTAAACAATGGAATGAAGCACAGCACATCTCATGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATCTACGCTTGCATAAGTTGGTCTTTGATGAAGAAGTGTTGCCAGATGGAACTGAAGTAGCATACTATGCTCGTGGCAAGCAACTATTGGTTGGTTACAAAATTGGATTTGCAATTCATTGTAGCTGCTGTGACTGTGAGGTTAGCCCTTCTCAGTTTGAAGCACATGCTGGTTGGGCGTCACGACGGAAACCTTACCTGCACATATACACATCTAATGGAGTCTCACTCCACGAGTTGTCCATCTCTCTATCAAAAGAGCGGAGGTTTTCTACCAGTGATAATGATGATCTATGCACTATATGTCAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCAAGAGCTTTCCACATTGATTGTGTTCCTCTTCCATGTATTCCAAGTGGTACCTGGTATTGTAAATATTGTCAGAATGTATTCCAGAAGGACAAGTATGTGCAGCATAATGCAAATGCTGTGGCAGCTGGAAGGATTGCAGGCATTGATCCTTTAGAACAGATAAACCAGAGATGCATTCGTATTGTCAAAACTCATGAGGTTGAGAATGGTGGATGTGCATTGTGCAGGAGCCAAGATTTCAGCAAAACCTTTGGTCCTCGAACAGTAATTATTTGTGATCAGTGTGAGAGGGAATATCATGTTGGGTGTTTGAAGGAGCATAACATGCAGAACCTAGAGGAATTACCTGAAGGGAATTGGTTCTGCTGCTCAGAGTGTGATAAAATTTATACTGCTCTGCTGAGTTTGGTGGCCCGTGGGGAAGAGAATCTTCCCGATTCCCTCCTAAGTCTGATTAAAAGGAAGCATGACGAAAAATGTTTAGAAGCTGGGTCTGATCTTGATATAAAATGGAGGGTTCTGAACTGGAGATCGTTTTCTTCTGATGAGACTAGGCAATTGCTTTCAAAGGCTGTTGCTATCTTCCATGAGCGGTTTGATCCAATAGTTGATTCGTCTTCAGGCCTTGATTTCATTCCGGCAATGCTTTATGGAAGGAACATCAAGGGTCAAGATTTTGGCGGAATGTACTGCGCATTGCTCACTGTCAACCAAGTGGTTGTGTCCGCGGGATTATTTCGTGTTTTTGGGCCAGAAGTAGCAGAGCTTCCCTTAGTGGCAACAATTACCGATTCCCAAGGACAGGGTTACTTCCAGTCCCTATTTTCTTGCATTGAGAGACTCCTTGGATCTTTGAAAGTGAGAAATTTTGTCCTACCAGCTGCTAGTGTAGCTGAATCCATATGGACCAGTAAATTTGGGTTTACAAAGCTAGACAAAGATGTGATAAACAAATATAAGAGAGCTTATCACATGATGGTATTTCAAGGGACCTCGTTACTAGAGAAGCCAGTTCCTGCACTCTAA 2721 0.452 MANGTDSERFVVLSGVRTGLKREFAFAMKAQSEICGSLGRTRSGKNRNVVQVLDRPVRKRSRESGSLEAKNDNPNGLVKTDEYVGDAMSEEEAKSDVVDLEEPKNQVEESQEKREELEGEAPMGASEEEQKSDDDVVVERGSEDEPKTGNLLECSKEEVMDAMAREGETCSLKEEGVIGNDCKVKGASVVKLPRRFTRSTLKEKVTNDEKVANDEGDGSGKGVENGDGVKKDIEVGLVIKTPAQVKKSKTSTGKKFPTKLKDLLATGILEGLSVNYIRGVKARRPGETGLRGVISGNGIVCYCENCNGVEVVTPTVFELHAGSSNKRPPEYIYLENGNTLREIMNTCLNVPVDTMEEAVQKVLGGFTMKKSNFCFRCRVDNVVSRLLCISCMELKNCQPSPAQTPETSNSCDSVAVQSRSPEPVVIPKSLNNGMKHSTSHGKSQGRLTRKDLRLHKLVFDEEVLPDGTEVAYYARGKQLLVGYKIGFAIHCSCCDCEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSKERRFSTSDNDDLCTICQDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNVFQKDKYVQHNANAVAAGRIAGIDPLEQINQRCIRIVKTHEVENGGCALCRSQDFSKTFGPRTVIICDQCEREYHVGCLKEHNMQNLEELPEGNWFCCSECDKIYTALLSLVARGEENLPDSLLSLIKRKHDEKCLEAGSDLDIKWRVLNWRSFSSDETRQLLSKAVAIFHERFDPIVDSSSGLDFIPAMLYGRNIKGQDFGGMYCALLTVNQVVVSAGLFRVFGPEVAELPLVATITDSQGQGYFQSLFSCIERLLGSLKVRNFVLPAASVAESIWTSKFGFTKLDKDVINKYKRAYHMMVFQGTSLLEKPVPAL 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3158g00052 906 SMART PHD_3 548 589 IPR001965 -
Gabi3158g00052 906 SMART PHD_3 636 692 IPR001965 -
Gabi3158g00052 906 ProSiteProfiles Zinc finger PHD-type profile. 546 591 IPR019787 -
Gabi3158g00052 906 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 792 880 IPR016181 -
Gabi3158g00052 906 Coils Coil 100 120 - -
Gabi3158g00052 906 MobiDBLite consensus disorder prediction 52 67 - -
Gabi3158g00052 906 Pfam PHD-finger 549 590 IPR019787 -
Gabi3158g00052 906 ProSitePatterns Zinc finger PHD-type signature. 637 691 IPR019786 -
Gabi3158g00052 906 SUPERFAMILY FYVE/PHD zinc finger 631 689 IPR011011 -
Gabi3158g00052 906 MobiDBLite consensus disorder prediction 38 152 - -
Gabi3158g00052 906 ProSiteProfiles Zinc finger PHD-type profile. 634 694 IPR019787 -
Gabi3158g00052 906 PANTHER AUTOIMMUNE REGULATOR 63 903 - -
Gabi3158g00052 906 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 694 IPR013083 -
Gabi3158g00052 906 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 535 612 - -
Gabi3158g00052 906 SUPERFAMILY FYVE/PHD zinc finger 534 590 IPR011011 -
Gabi3158g00052 906 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 534 615 IPR013083 -
Gabi3158g00052 906 MobiDBLite consensus disorder prediction 207 228 - -
Gabi3158g00052 906 Pfam Tify domain binding domain 292 347 IPR032308 -
Gabi3158g00052 906 Pfam Tify domain binding domain 488 530 IPR032308 -
Gabi3158g00052 906 ProSitePatterns Zinc finger PHD-type signature. 549 588 IPR019786 -
Gabi3158g00052 906 MobiDBLite consensus disorder prediction 84 152 - -
Gabi3158g00052 906 CDD PHD1_AIRE 548 588 - -
Gabi3158g00052 906 FunFam PHD finger family protein 733 902 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3158g00052 Gabi-Chr3158 454868 461695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3158g00052 257 903 PHD Transcription Factor Family AT2G36720 45.961 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3158g00052 TDBD 3.2e-16 No_clan