Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3158g00048 ATGATGCCAAAGGCTCCTCAGATGATTCCTGTGACCGAATATTTGGCTTCACCCTCTGTTGAAGTAAACAACAATAGTAGTGGCGGCTCAACAGGTTCACACTCTAGTTCCCTTCTCTTCTATCTTTCTGTTCTCAAAGACAAGCTTAGTCACGTGCAGACACTCGTGGGTGTTCTTGTCTCTCCTCATCAACAGAACCACCTACCCGAGTCATCAACTTCCCTGGCCATATCCACCATGAATTCCACAATTCAGGAAATCATAGTTGCAGCAACTTCAATAAGGTTCACTTGCCAACAAATGATGGCTCTTGGTTCCACACCAGGTACTAGTACTACTACTTGCACTGAAGAATTGCACCACCACCACCACCACCAAATTGATCATCGTGATCATAGGTTACCACCATATCAATTAAACTTTGCTAATAATAATAGTAATAGAGGAGTTGTTAGTAACATAGGCCTAGATATTAGAGGGCAAAGTTTCTTTTCTAATTCTGAGGCTGAAACATTGGATTGGTTTTCTGAAGGCTATAATAATAATAATAACAACAACAACAATAGTACTAATAGTAATTGTAACTTTAAGGATCATGATCCATCTGTTGCATCTAGTGAAGCCAACATTAATAGTAGAGAAGGATTGTCTTCAGAGAATGAAACAGATATAATTGAATTGGATGCTGCGGATTTGTTGGCAAGGTACACACATTTTTGCCAAGTTTGTGGGAAAGGGTTTAAGCGTGATGCGAATTTGAGGATGCATATGAGAGCACATGGTGATGAGTACAAAACAAATGCAGCTTTAAGTAACCCAATGAAAAACAAAGGGATGAGTTTGGGTGAGGGAAGTGGCTATTTGAATAGCATGAAGCCTAAGAAATATTCATGTCCTCATGAAGGGTGTAGGTGGAACAAAAAGCATGCCAGGTTCCAACCTTTGAAGTCAATGGTTTGTGTTAAGAATCATTACAAGAGAAGCCATTGTCCCAAAATGTACGTGTGCAAGAGGTGCAACCAGAAACAGTTCTCGGTGCTTTCTGATTTGAGGACTCACGAGAAGCATTGTGGGGACCCCAAGTGGCAGTGCTCCTGTGGCACTACGTTTTCTAGGAAAGACAAGCTTATGGGTCACGTTGCTTTGTTCTTTGGACACACCCCAGTTATCATTGGCTTGTCACACTCAGGAAAATCAGAAGAACAAACATTGCAGCAGCAGATCGGTGGTAGCTCAAGATCATGTGTTTGA 1251 0.4141 MMPKAPQMIPVTEYLASPSVEVNNNSSGGSTGSHSSSLLFYLSVLKDKLSHVQTLVGVLVSPHQQNHLPESSTSLAISTMNSTIQEIIVAATSIRFTCQQMMALGSTPGTSTTTCTEELHHHHHHQIDHRDHRLPPYQLNFANNNSNRGVVSNIGLDIRGQSFFSNSEAETLDWFSEGYNNNNNNNNNSTNSNCNFKDHDPSVASSEANINSREGLSSENETDIIELDAADLLARYTHFCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPMKNKGMSLGEGSGYLNSMKPKKYSCPHEGCRWNKKHARFQPLKSMVCVKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDPKWQCSCGTTFSRKDKLMGHVALFFGHTPVIIGLSHSGKSEEQTLQQQIGGSSRSCV 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3158g00048 416 Gene3D Classic Zinc Finger 332 382 - -
Gabi3158g00048 416 ProSiteProfiles Zinc finger C2H2 type domain profile. 238 265 IPR013087 -
Gabi3158g00048 416 SMART c2h2final6 334 356 IPR013087 -
Gabi3158g00048 416 SMART c2h2final6 296 329 IPR013087 -
Gabi3158g00048 416 SMART c2h2final6 238 260 IPR013087 -
Gabi3158g00048 416 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 27 396 IPR044300 GO:0010044|GO:0010447
Gabi3158g00048 416 MobiDBLite consensus disorder prediction 183 217 - -
Gabi3158g00048 416 ProSitePatterns Zinc finger C2H2 type domain signature. 240 260 IPR013087 -
Gabi3158g00048 416 SUPERFAMILY beta-beta-alpha zinc fingers 237 263 IPR036236 -
Gabi3158g00048 416 Gene3D Classic Zinc Finger 236 316 - -
Gabi3158g00048 416 FunFam Zinc finger 45-like 237 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3158g00048 Gabi-Chr3158 427585 428835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3158g00048 35 389 C2H2 Transcription Factor Family AT5G22890 45.152 5.49e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3158g00048 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3158g00048 - - gsj:114375424 431.795