Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3158g00029 ATGTCATTCACAGGAACTCTTGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGTGTACCTTACCATAAAGCCTGCTTCAAATGCAGTCACTGCAAGGGATATCTTACGATGAACACCTATTCCTCAATGGATGGTGTCCTCTATTGCAAGCCACACTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAAGCAAAGTCTTCTGATAAACAAAATGAGCTAATGAATAGGACTCCTAGCAGACTCTCATCCATGTTCAGTGGAACTCTAGACAAATGCTCGGTTTGCTCAAAAACAGTCTATCCGCTGGAAAAGTTGACACTGGAAGGGGAATGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGTTGCCCTCTCACACATTCTTCCTATGCTGCACTGGATGGTGTTCTATACTGCAGGCACCATTTTGCACAGCTTTTCATGGAGAAGGGAAACTACAATCATGTACTCCAGGCTGCAGCAAACAAGAAGAATGCTACTCCACCTCCTGAACCAGCTGATGATGAAGAACCATCAAAGCCAGAGCCAGAGCCAGAGCCAGAGCCTGAGCCTGAGCCACAGACAGAATCTGAGGAACAGAAGACAGAAGAAAATTCTAAAAATGAAACATAG 678 0.4381 MSFTGTLDKCKACDKTVYVVDLLTLEGVPYHKACFKCSHCKGYLTMNTYSSMDGVLYCKPHFEQLFKESGNFSKNFQAKSSDKQNELMNRTPSRLSSMFSGTLDKCSVCSKTVYPLEKLTLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAANKKNATPPPEPADDEEPSKPEPEPEPEPEPEPQTESEEQKTEENSKNET 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3158g00029 225 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Gabi3158g00029 225 FunFam LIM domain and actin-binding 1 4 74 - -
Gabi3158g00029 225 MobiDBLite consensus disorder prediction 209 225 - -
Gabi3158g00029 225 FunFam LIM domain and actin-binding 1 100 170 - -
Gabi3158g00029 225 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Gabi3158g00029 225 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Gabi3158g00029 225 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Gabi3158g00029 225 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Gabi3158g00029 225 Pfam LIM domain 10 65 IPR001781 -
Gabi3158g00029 225 Pfam LIM domain 106 161 IPR001781 -
Gabi3158g00029 225 SMART lim_4 105 157 IPR001781 -
Gabi3158g00029 225 SMART lim_4 9 61 IPR001781 -
Gabi3158g00029 225 Gene3D Cysteine Rich Protein 103 170 - -
Gabi3158g00029 225 MobiDBLite consensus disorder prediction 192 208 - -
Gabi3158g00029 225 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Gabi3158g00029 225 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Gabi3158g00029 225 MobiDBLite consensus disorder prediction 176 225 - -
Gabi3158g00029 225 CDD LIM1_SF3 6 68 - -
Gabi3158g00029 225 Gene3D Cysteine Rich Protein 5 102 - -
Gabi3158g00029 225 PANTHER OS06G0237300 PROTEIN 6 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3158g00029 Gabi-Chr3158 303816 305819 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gabi3158g00029 LIM 4.2e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3158g00029 - K09377 gmx:100779513 345.51