Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3158g00026 ATGAACAATAGAGCGAGATACCCACCTGGGATCGGTCTAGGACGAGGTAATGGAGGTTTGAACTCGAACCCTGGGTTTCAACCAAGGCCACATCAACATCAGTATGTGCAGAGGCACATGGTGCATCCTCAGCAGTATCAGCAGCATCAACAGAATCAGCAACATCAGCATCAGCAACAGCAGCAGCAACAGCAACAACAACAACAACAGTGGTTGAGAAGAACCCAATTGGGGGGTACTGACACCAACGTTGTTGAGGAGGTTGAGAAGACTGTACAGTCTGAAGCCGTCGACCCAAGTTCACAAGATTGGAAGGCAAGACTAAAGATTCCACCAGCTGATACACGCTATAAGACTGAGGATGTAACAGCAACGAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTGATGGGAATATATGAGAAGGGTTTTGAGAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCCAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGATGATAATGTTATTCAAGTTGTTATCCTGGTCCCAACACGAGAATTAGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTCGGAAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACTAGCCTGAAAGATGATATTATGCGTTTATATCAGCCAGTTCATTTGCTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAACAAGGGTGTATGCGTTCTAAAAGATTGCTCTATGCTTGTAATGGACGAGGCTGATAAGCTTCTCTCCCCAGAGTTCCAACCTTCTATAGAGCATCTGATTCAATTTCTTCCTTCAAACCGTCAAATTCTGATGTTTTCAGCTACATTTCCTGTTACCGTAAAGGACTTCAAGGATAGATATCTTCGTAGGTCGTATGTCATTAATCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTGAATACCCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCTGTGAATCGGGTTGAACTCCTTGCTAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGACTTCCGCAATGGTGCATGCAGGAATTTAGTTTGTACTGATCTTTTCACTAGGGGAATAGACATCCAAGCAGTCAATGTCGTTATTAATTTTGATTTCCCCAAGAACTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGATCGCTTCAATTTATATAGAATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCGCCACACATTGATCAGGGAATATATTGCCGGTGA 1509 0.4155 MNNRARYPPGIGLGRGNGGLNSNPGFQPRPHQHQYVQRHMVHPQQYQQHQQNQQHQHQQQQQQQQQQQQQWLRRTQLGGTDTNVVEEVEKTVQSEAVDPSSQDWKARLKIPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDDNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLANKGVCVLKDCSMLVMDEADKLLSPEFQPSIEHLIQFLPSNRQILMFSATFPVTVKDFKDRYLRRSYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQGIYCR 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3158g00026 502 MobiDBLite consensus disorder prediction 38 67 - -
Gabi3158g00026 502 Pfam Helicase conserved C-terminal domain 354 460 IPR001650 -
Gabi3158g00026 502 Pfam DEAD/DEAH box helicase 153 317 IPR011545 GO:0003676|GO:0005524
Gabi3158g00026 502 Gene3D - 333 501 IPR027417 -
Gabi3158g00026 502 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 63 501 - -
Gabi3158g00026 502 SMART ultradead3 147 343 IPR014001 -
Gabi3158g00026 502 SMART helicmild6 379 460 IPR001650 -
Gabi3158g00026 502 FunFam ATP-dependent RNA helicase DDX6 333 502 - -
Gabi3158g00026 502 CDD SF2_C_DEAD 340 469 - -
Gabi3158g00026 502 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 329 IPR014001 -
Gabi3158g00026 502 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 128 156 IPR014014 GO:0003724
Gabi3158g00026 502 Gene3D - 92 332 IPR027417 -
Gabi3158g00026 502 CDD DEADc_DDX6 130 330 - -
Gabi3158g00026 502 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 275 283 IPR000629 -
Gabi3158g00026 502 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 339 499 IPR001650 -
Gabi3158g00026 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 482 IPR027417 -
Gabi3158g00026 502 MobiDBLite consensus disorder prediction 1 67 - -
Gabi3158g00026 502 FunFam ATP-dependent RNA helicase DDX6 109 332 - -
Gabi3158g00026 502 Coils Coil 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3158g00026 Gabi-Chr3158 263676 272580 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3158g00026 128 495 Eukaryotic Initiation Factors Gene Family AT3G19760 37.838 1.21e-91 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3158g00026 K12614 - qsa:O6P43_027218 874.389