Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3158g00025 ATGAACAATAGAGCGAGATACCCACCTGGGATCGGTCTAGGACGAGGTAATGGAGGTTTGAACTCGAACCCTGGGTTTCAACCAAGGCCACATCAACATCAGTATGTGCAGAGGCACATGGTGCATCCTCAGCAGTATCAGCAGCATCAACAGAATCAGCAACATCAGCATCAGCAACAGCAGCAGCAACAGCAACAACAACAACAACAGTGGTTGAGAAGAACCCAATTGGGGGGTACTGACACCAACGTTGTTGAGGAGGTTGAGAAGACTGTACAGTCTGAAGCCGTCGACCCAAGGTGTTCACAAGATTGGAAGGCAAGACTAAAGATTCCACCAGCTGATACACGCTATAAGACTGAGGATGTAACAGCAACGAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTGATGGGAATATATGAGAAGGGTTTTGAGAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCCAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGATGATAATGTTATTCAAGTTGTTATCCTGGTCCCAACACGAGAATTAGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTCGGAAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACTAGCCTGAAAGATGATATTATGCGTTTATATCAGCCAGTTCATTTGCTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAACAAGGGTGTATGCGTTCTAAAAGATTGCTCTATGCTTGTAATGGACGAGGCTGATAAGCTTCTCTCCCCAGAGTTCCAACCTTCTATAGAGCATCTGATTCAATTTCTTCCTTCAAACCGTCAAATTCTGATGTTTTCAGCTACATTTCCTGTTACCGTAAAGGACTTCAAGGATAGATATCTTCGTAGGTCGTATGTCATTAATCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTGAATACCCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCTGTGAATCGGGTTGAACTCCTTGCTAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGACTTCCGCAATGGTGCATGCAGGAATTTAGTTTGTACTGATCTTTTCACTAGGGGAATAGACATCCAAGCAGTCAATGTCGTTATTAATTTTGATTTCCCCAAGAACTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGATCGCTTCAATTTATATAGAATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCGCCACACATTGATCAGGGAATATATTGCCGGTGA 1512 0.416 MNNRARYPPGIGLGRGNGGLNSNPGFQPRPHQHQYVQRHMVHPQQYQQHQQNQQHQHQQQQQQQQQQQQQWLRRTQLGGTDTNVVEEVEKTVQSEAVDPRCSQDWKARLKIPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDDNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLANKGVCVLKDCSMLVMDEADKLLSPEFQPSIEHLIQFLPSNRQILMFSATFPVTVKDFKDRYLRRSYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQGIYCR 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3158g00025 503 CDD DEADc_DDX6 131 331 - -
Gabi3158g00025 503 SMART helicmild6 380 461 IPR001650 -
Gabi3158g00025 503 MobiDBLite consensus disorder prediction 38 67 - -
Gabi3158g00025 503 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 340 500 IPR001650 -
Gabi3158g00025 503 Gene3D - 334 502 IPR027417 -
Gabi3158g00025 503 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 276 284 IPR000629 -
Gabi3158g00025 503 Gene3D - 102 333 IPR027417 -
Gabi3158g00025 503 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 63 502 - -
Gabi3158g00025 503 SMART ultradead3 148 344 IPR014001 -
Gabi3158g00025 503 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 129 157 IPR014014 GO:0003724
Gabi3158g00025 503 FunFam ATP-dependent RNA helicase DDX6 334 503 - -
Gabi3158g00025 503 Pfam Helicase conserved C-terminal domain 355 461 IPR001650 -
Gabi3158g00025 503 CDD SF2_C_DEAD 341 470 - -
Gabi3158g00025 503 FunFam ATP-dependent RNA helicase DDX6 110 333 - -
Gabi3158g00025 503 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 330 IPR014001 -
Gabi3158g00025 503 Pfam DEAD/DEAH box helicase 154 318 IPR011545 GO:0003676|GO:0005524
Gabi3158g00025 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 483 IPR027417 -
Gabi3158g00025 503 MobiDBLite consensus disorder prediction 1 67 - -
Gabi3158g00025 503 Coils Coil 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3158g00025 Gabi-Chr3158 263676 272581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3158g00025 129 496 Eukaryotic Initiation Factors Gene Family AT3G19760 37.838 1.28e-91 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3158g00025 K12614 - qsa:O6P43_027218 867.84