Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi3158g00025 | ATGAACAATAGAGCGAGATACCCACCTGGGATCGGTCTAGGACGAGGTAATGGAGGTTTGAACTCGAACCCTGGGTTTCAACCAAGGCCACATCAACATCAGTATGTGCAGAGGCACATGGTGCATCCTCAGCAGTATCAGCAGCATCAACAGAATCAGCAACATCAGCATCAGCAACAGCAGCAGCAACAGCAACAACAACAACAACAGTGGTTGAGAAGAACCCAATTGGGGGGTACTGACACCAACGTTGTTGAGGAGGTTGAGAAGACTGTACAGTCTGAAGCCGTCGACCCAAGGTGTTCACAAGATTGGAAGGCAAGACTAAAGATTCCACCAGCTGATACACGCTATAAGACTGAGGATGTAACAGCAACGAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTGATGGGAATATATGAGAAGGGTTTTGAGAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCCAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGATGATAATGTTATTCAAGTTGTTATCCTGGTCCCAACACGAGAATTAGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTCGGAAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACTAGCCTGAAAGATGATATTATGCGTTTATATCAGCCAGTTCATTTGCTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAACAAGGGTGTATGCGTTCTAAAAGATTGCTCTATGCTTGTAATGGACGAGGCTGATAAGCTTCTCTCCCCAGAGTTCCAACCTTCTATAGAGCATCTGATTCAATTTCTTCCTTCAAACCGTCAAATTCTGATGTTTTCAGCTACATTTCCTGTTACCGTAAAGGACTTCAAGGATAGATATCTTCGTAGGTCGTATGTCATTAATCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTGAATACCCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCTGTGAATCGGGTTGAACTCCTTGCTAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGACTTCCGCAATGGTGCATGCAGGAATTTAGTTTGTACTGATCTTTTCACTAGGGGAATAGACATCCAAGCAGTCAATGTCGTTATTAATTTTGATTTCCCCAAGAACTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGATCGCTTCAATTTATATAGAATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCGCCACACATTGATCAGGGAATATATTGCCGGTGA | 1512 | 0.416 | MNNRARYPPGIGLGRGNGGLNSNPGFQPRPHQHQYVQRHMVHPQQYQQHQQNQQHQHQQQQQQQQQQQQQWLRRTQLGGTDTNVVEEVEKTVQSEAVDPRCSQDWKARLKIPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDDNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLANKGVCVLKDCSMLVMDEADKLLSPEFQPSIEHLIQFLPSNRQILMFSATFPVTVKDFKDRYLRRSYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQGIYCR | 503 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi3158g00025 | 503 | CDD | DEADc_DDX6 | 131 | 331 | - | - | |
Gabi3158g00025 | 503 | SMART | helicmild6 | 380 | 461 | IPR001650 | - | |
Gabi3158g00025 | 503 | MobiDBLite | consensus disorder prediction | 38 | 67 | - | - | |
Gabi3158g00025 | 503 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 340 | 500 | IPR001650 | - | |
Gabi3158g00025 | 503 | Gene3D | - | 334 | 502 | IPR027417 | - | |
Gabi3158g00025 | 503 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 276 | 284 | IPR000629 | - | |
Gabi3158g00025 | 503 | Gene3D | - | 102 | 333 | IPR027417 | - | |
Gabi3158g00025 | 503 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 63 | 502 | - | - | |
Gabi3158g00025 | 503 | SMART | ultradead3 | 148 | 344 | IPR014001 | - | |
Gabi3158g00025 | 503 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 129 | 157 | IPR014014 | GO:0003724 | |
Gabi3158g00025 | 503 | FunFam | ATP-dependent RNA helicase DDX6 | 334 | 503 | - | - | |
Gabi3158g00025 | 503 | Pfam | Helicase conserved C-terminal domain | 355 | 461 | IPR001650 | - | |
Gabi3158g00025 | 503 | CDD | SF2_C_DEAD | 341 | 470 | - | - | |
Gabi3158g00025 | 503 | FunFam | ATP-dependent RNA helicase DDX6 | 110 | 333 | - | - | |
Gabi3158g00025 | 503 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 160 | 330 | IPR014001 | - | |
Gabi3158g00025 | 503 | Pfam | DEAD/DEAH box helicase | 154 | 318 | IPR011545 | GO:0003676|GO:0005524 | |
Gabi3158g00025 | 503 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 199 | 483 | IPR027417 | - | |
Gabi3158g00025 | 503 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
Gabi3158g00025 | 503 | Coils | Coil | 50 | 70 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi3158g00025 | Gabi-Chr3158 | 263676 | 272581 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi3158g00025 | 129 | 496 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 37.838 | 1.28e-91 | 283 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi3158g00025 | K12614 | - | qsa:O6P43_027218 | 867.84 |