Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3158g00017 ATGGATCGTGGGGACCAAATGGCGTTATCTGGTTCTGCATCTTACTATATGCAGCAGAGAGGAATAGCTGGTTCTGGAGCACAACCTGAGTTGCATGTTTCACCTAGTCTTCGTCCACTGTCTAATCCCAATCTATCATTTCAATCCAGTATTGGTGGTGGTACCATTGGATCCACCTTACCATTAGAATCTTCTGCGATCTCATCTCATGGTGTTAATGTGGGTGCTCCTTCTGGGACTCCACCTGGGGAACCTGCTAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGTTCTGATGGAAATGTGTCATTGGCACTGACTCCAACATCATCTAGTCATCCGGGAACCTTGTCGCAAAGTCAGAAACGGGGCAGAGGGCGCCCACCGGGGACTGGGAAGAAACAGCAGTTGGCTTCTCTTGGTGAATTGGTATCTGGTTCGGCTGGGATGGGATTCACTCCTCATATCATCCATATTCCAAGTGGAGAAGACATTTCAACAAAAATTATGGCATTCTCTCAGCAAGGTCCTAGAGCTGTATGCATTTTGTCAGGCACTGGTGCTGTATCAACAGTGACACTTCATCAACCTGCAACTTCAGGTGGCACTGTCACATATGAGGGGCGTTTTGAGATATTGTGCCTGTCAGGATCTTTATTGCTTACTGATAGTGGCCGAACTGGTGGAATGAATGTTGCCCTTGCTAGTCCTGATGGTCGTGTCATTGGGGGAGGGGTTGCTGGTTTGCTTATTGCAGCAAGTCCTGTTCAGGTGGTAGTTGGGAGCTTTCTATGGGGTGGATCAAAGACAAAGAAGAGGAAAAGGGAAGGCTCAGAAGGTGCAGAAGTTGGTGTTGAGTCAGATCATCAGGGAGTTCATAATCCAGTTGCACCAAATAGCATTTCACCAAATCAAAATCTCACTCCAACCTCTTCTTTAAATCCTTGGCCAGCATCACGTCCGGTTGATATGCGTAATTCCCATGTTGACATTGATTTAATGCGTGGGTGA 1011 0.4698 MDRGDQMALSGSASYYMQQRGIAGSGAQPELHVSPSLRPLSNPNLSFQSSIGGGTIGSTLPLESSAISSHGVNVGAPSGTPPGEPAKRKRGRPRKYGSDGNVSLALTPTSSSHPGTLSQSQKRGRGRPPGTGKKQQLASLGELVSGSAGMGFTPHIIHIPSGEDISTKIMAFSQQGPRAVCILSGTGAVSTVTLHQPATSGGTVTYEGRFEILCLSGSLLLTDSGRTGGMNVALASPDGRVIGGGVAGLLIAASPVQVVVGSFLWGGSKTKKRKREGSEGAEVGVESDHQGVHNPVAPNSISPNQNLTPTSSLNPWPASRPVDMRNSHVDIDLMRG 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3158g00017 336 CDD DUF296 153 263 IPR005175 -
Gabi3158g00017 336 MobiDBLite consensus disorder prediction 293 317 - -
Gabi3158g00017 336 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 263 IPR005175 -
Gabi3158g00017 336 MobiDBLite consensus disorder prediction 102 125 - -
Gabi3158g00017 336 Gene3D - 154 288 - -
Gabi3158g00017 336 MobiDBLite consensus disorder prediction 69 137 - -
Gabi3158g00017 336 MobiDBLite consensus disorder prediction 270 321 - -
Gabi3158g00017 336 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 266 - -
Gabi3158g00017 336 MobiDBLite consensus disorder prediction 20 45 - -
Gabi3158g00017 336 ProSiteProfiles PPC domain profile profile. 148 284 IPR005175 -
Gabi3158g00017 336 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Gabi3158g00017 336 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Gabi3158g00017 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 69 311 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3158g00017 Gabi-Chr3158 196696 202024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3158g00017 1 336 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 46.814 1.07e-79 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3158g00017 - - gmx:100814615 530.406