Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3158g00003 ATGTTCATTTTTCCAACGCTTCAGTCCATGATGCTCATGCCATTTTGGAGGCTTCTTGTAGTGTGCTTTTGTGCATTGTTAATGGCCTTTTCTTCTGATGTTGCTTCTGCTTCGGTCACATTACAAAGCATCGAAGCAAATGCTTTGTTGAAATGGAAAGCCAACCTTCACAACCAAAGCCAGGCTTTGCTATCTTCATGGACTGGCAATACTCCTTGCAATAATTGGCTTGGAATTGAGTGTGACGTGTCCATGTCCGTCTCCAACGTTAATCTTACAAATATTGGATTAAGAGGTATGCTTCAAAATCTCAACTTCTCTTTACTTGCAAACATCCTCACTATAGATATGAGTCTCAACTCCTTGAATGGAAGTATTCCTCCCCAAATTGTTGTGTTGTCCAAACTCTCCTATCTTGATCTCAGTCACAATCGTCTCACAGGGTCAATCCCACCTTTGATTGGTAACTTGGTTGATTTGGAGTTTGTTTACCTTCAAAACAATAAACTCTTTGGTCCAATTCCTTCCACTATTGGAAATTTGACAAAGGTCATTAATATATCTTTATACACAAATGAACTTACTGGGCCGATACCACCCTCAATTGGTAATTTAGCTAATTTGAAGATAGTTGACTTTTCTGAAAATAAACTCTCAGGACCAATACCTTCCACTATTGGAAATTTGACAAAGGTCACTGTGTTACATCTATTCTCAAATGAACTTACTAGGCCGATACCACCCTCAATTGGTAACTTGGCTAACTTGGAATCAGTTGAGCTTTCTGAAAATAAACTCTCTGAATCAATTCCTTCCACTATTGGAAATTTGGCAAAGGTCAATGATTTATATTTATCCACAAATGAACTCATTGGGCCGATACCACCCTCAATTGGTAACTTAGCCAACTTAGAATTAGTTGACTTTTCTGAAAACAAACTTTCTGGACCAATTCCTTCCACTATTGGAAATTTGACAAAGGTCAGTTTATTATCTTTATCCACAAATGAACTCATTGGGCCGATACCACCCTCAATTGGTAACTTGGCTAACTTGGAATCAGTTTACCTTTCTGAAAACAAACTTTCTGGACCAATTCCTTCCACTATTGGAAATTTGACAAAGGTCAGTTTATTATCTTTGTCCATAAATGAATTCATTGGGCCGATACCACCCTCAATTGGTAACTTGGCTAACTTGGAATCAGTTTACCTTTCTGAAAACAAATTTTTTGGACCAATTCCTTCCACTATTGGAAATTTGACAAAGGTTAGTTTATTATATTTATACACAAATGAACTTACTGGACCAATGCCACCCTCAATTGGTAATTTGGCTAATTTGGAGAGAGTTGACTTTTCTAAAAATAAACTCTCAGGACCAATACCTCCCACTATTGGAAATTTGGCAAAGGTCATTTTGTTACATTTATTCTCAAATGAACTTACTGGGCCGATACCACCCTCAATTGGTAACTTGGCTAACTTGGAATCAGTTGGCGAAAATGAACTCAGCGGGAACATTCCAATAGAAATGAACAGGCTTACAAATTTTGAAGATTTGCAGTTATTTAATAATCATTTCATTGGCCATTTGCCTCAAAACATTTGTATTAGTGGAAAGTTGTCAAACTTTACTGCTTTCAATAACCATTTTATTGGCCTCGTTCCAAAGAGTTTGAAGAATTGCTCCAGCCTAATAAGAGTTCGACTTCAACAAAACCAACTTACTGGAAATATAACAGATGAATTTGGTGTATATCCAAATTTGGACTACATGGAATTGAGTGAAAATAACTTTTATGGTCACCTTTCACCAAATTGGGGAAAGTGCTATGGTCTCACAAGCCTCAGGATCTCCAACAATAAATTATCAGGTGTCATACCAAAAGAACTAGGTGAGGCAATCAACTTACATGTACTTGACTTATCTTCAAACCATCTCACAGGAAAAATTCCAAATGAGTTAGGTAAATTGACTTCATTGACCAAACTCTTGATAAGCAACAATCATCTTTCAGAAAATGTTCCCGTGCAAATAACATTATTGCCCAAACTTGAGACCTTGGATCTTGGAGGGAATAATTTCAGTGGCCTCATCACAGAACAACTTGGGAGGCTGCCTATGTTGTTGAACTTAAATTTAAGCCAAAATAATTTTAAAGGAAATATTCCCGTTGAGTTTGGCATATTCAAAGTTCTTCGCAGTCTCGATCTTAGTGGGAATTTTTTGGGCGGAACAATACCACCAATGCTTGGACAGCAATACTTAGAAATGTTGAATCTCTCACATAATAGTCTTTCAGGTAGCATTCCCTCTAGCTTTGATGGTATGTTAAGCTTGACATATGTTGATATATCATACAACCAATTAGAGGGTCCACTTCCAAACATTACAGCCTTTCAGCATGCTACAATTGAAGCTTTGAGAAATAATAAATGCTTGTGTGGTAATGTCTCTGGCTTGGAGCCTTGCCCTTCATCAAATTGCAGATCTCATCATCATAAGACTAACAAAGTCATATTGGTGGTTCTACCCTTTACTTTGGGCATTCTACTGGTACTCTTTGTTATCAGAGTCTCGTATCATCTCTGTCGATCTTCACACACAAAAGAAAACCAGGCTGCAGAATCTCAAGCTCAAAATTATTTTGCAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAACATTATTGAAGCCACAGAAGAGTTTGACAACAAACATCTCATTGGGGTTGGAGGGCATGGATGTGTTTACAAAGTAGAATTGCCTACGAGTCAAGTTGTTGCTGTGAAGAAACTTCATTCAGTACCAAATGAAGAAATCTCCAGTCTAAAAGCTTTCACAAGTGAGATCCAAGCTTTGACAGAAATTCGACATCATAACATTGTGAAGTTATATGGGTTTTGTTCTCATTCGCGATACTCATTTCTGGTTTATGAGTTCTTGGAGAAAGGTAGTGTGGAGATGATTTTGAAAAATGATGAACAAGCAACTAAGTTTGATTGGAATAGGAGAGTGAATGTTGTTAAAGGCATAGCTAATGCTTTATCCTATATGCACTGTGATTGCCGGCCTCCAATTGTTCATCGAGATATATCAAGCAAGAATATTCTTTTGGATTTGGAATATGTGGCTCATGTCTCTGACTTCGGAACAGCTAAGCTCCTCAATCCTAATTCATCCAACTAGACTTCATTTGCAGGCACCTTTGGATATGTTGCTCCAGAACTTGCGTACACAATGAAAGTAAATGAGAAATGTGATGTGCATAGTTTTGGAGTATTAGCATTGGAAATACTCTTTGGAAAGCACCCTAGTGATGTCATGTCTTCTTCATGGATTGTTGTGGCCTCAACACTAGATAATATGTCATTGATGGATAAGTTGGACCAACGTCTCCCTCATCCTGTATATCCTATTGTGAAGGATGTATTATCAATTGCAAGGATAGCAATTGGTTGCTTGAATGAAAGCCCACGCTCTCGCCCTACCATGGAGCAGGTTGTTAAGGAGCTTGTTGGGTCAATACCACCCTCAATTGGTAATTTGGGTAATTTGGAGACAGTTCAATTTTCTAAAAATAAACTCTCAGGACCAATACCTCCCACTATTGGAAATTTGTCAAAGGTCAAATCATTATATTTGCACTCAAATGAACTCAGCGGGAACATTCCAATAGAAATGAACAGGCTTACAAATTTGGAAATGTTGCAGTTATTTAATAATCATTTCATTGGCCATTTGCCTCAGAACATTTGCATTAGTGGAAAGTTGTCAAAGTTTAGTGCTTCTAATAACAATTTTGCTGGCCCCGTTCCAAAGAGTTTGAAGAATTGCTCCAGCCTAATAAGAGTTCGGCTTCAACAAAACCAACTGACTGGAAATATAACAGATGAATTTGGTGTATATCCAAATTTGGACTACATGGAATTGAGTGAAAATAACTTTTATGGTCACCTTTCACCAAACTGGGGAAAGTGCTATAGTCTCACAAGCCTTAAGATCTCCAACAATAAATTATCAGGTGTCATACCACAAGAACTAGGCGAGGCAATCAACTTACATGTACTTGACTTATCTTCAAACCATCTCATAGGAAAACTTCCAAATGAGTTAGGTAAATTGACTTCATTGATCAAACTCTTGATAAGCAACAATCATCTTTCAGAAAATGTTCCCGTGCAAATAACATCATTGCCCAAACTTGAGACCTTGGATCTTGGAGGGAATAATTTCAGTGGCTTCATCACAGGACAACTTGGGAGGCTGCCTATGTTGTTGAACTTAAATTTAAGCCAAAATAATTTTATGGGAAATATTCCTGTTGAGTTTGGCATATTCAAAGTTCTTCGTAGTCTCGATCTTAGTGGGAATTTTTTGGGTGGAACAATACCAGCAATGCTTGGACAGTTGAAATACTTAGAAATATTGAATCTCTCACATAATAGTCTTTCAGGTACCATTCCCTCTAGCTTTGATGGTATGTTAAGCTTGACATATATTGGTATATCGTACAACCAATTAGAGGGTCCACTTCCAAACATTCCAGCCTTTCATTACGCTACAATTGAAGCTTTGAGAAATAATAAATGCTTGTGTGGTAATGTCTCTGGTTTGGAGCCTTGCCCTTCATCAAATTCCACAGAAGAGTTTGACAACAAACATCTCATTGGGGTTGGAGGGCATGGATGTGTTTACAAAGCAGAATTGCCGACGGGTCAAGTTGTTGCTGTGAAGAAACTCCATTCAGCACCAAATGAAGAAATCTCTAATCTAAAAGCTTTCACAAGTGAGATCCAAGCTTTGACAGAAATTCGACATCGTAACATTGTCAAGTTATATGGGTTTTGTTCTCATTCGCGATACTCATTTCTGGTTTATGAGTTCTTGGAGAAAGGTAGTGTGGAGATGATTTTGAAAAATAATGAACAAGCAACTAAGTTTGATTGGAATAGGAGGGTGAATGTGGTTAAAGGCGTAGCTAATGCTTTATGCTATATGCACTGTGATTGCCGGCCTCCAATTGTTCATCGAGATATATCAAGCAAGAATATTCTTTTGGATTTGGAATATGTGGCTCATGTCTCTGACTTTGGAACAGCTAAACTTCTCAATCCTAATTCAACCAATTGGACTTCATTTGCTGGCACTTTGGATATGTTGCTCCAGGTTCATTCCCTTTCTTTAAACTTATAA 5202 0.3766 MFIFPTLQSMMLMPFWRLLVVCFCALLMAFSSDVASASVTLQSIEANALLKWKANLHNQSQALLSSWTGNTPCNNWLGIECDVSMSVSNVNLTNIGLRGMLQNLNFSLLANILTIDMSLNSLNGSIPPQIVVLSKLSYLDLSHNRLTGSIPPLIGNLVDLEFVYLQNNKLFGPIPSTIGNLTKVINISLYTNELTGPIPPSIGNLANLKIVDFSENKLSGPIPSTIGNLTKVTVLHLFSNELTRPIPPSIGNLANLESVELSENKLSESIPSTIGNLAKVNDLYLSTNELIGPIPPSIGNLANLELVDFSENKLSGPIPSTIGNLTKVSLLSLSTNELIGPIPPSIGNLANLESVYLSENKLSGPIPSTIGNLTKVSLLSLSINEFIGPIPPSIGNLANLESVYLSENKFFGPIPSTIGNLTKVSLLYLYTNELTGPMPPSIGNLANLERVDFSKNKLSGPIPPTIGNLAKVILLHLFSNELTGPIPPSIGNLANLESVGENELSGNIPIEMNRLTNFEDLQLFNNHFIGHLPQNICISGKLSNFTAFNNHFIGLVPKSLKNCSSLIRVRLQQNQLTGNITDEFGVYPNLDYMELSENNFYGHLSPNWGKCYGLTSLRISNNKLSGVIPKELGEAINLHVLDLSSNHLTGKIPNELGKLTSLTKLLISNNHLSENVPVQITLLPKLETLDLGGNNFSGLITEQLGRLPMLLNLNLSQNNFKGNIPVEFGIFKVLRSLDLSGNFLGGTIPPMLGQLXYLEMLNLSHNSLSGSIPSSFDGMLSLTYVDISYNQLEGPLPNITAFQHATIEALRNNKCLCGNVSGLEPCPSSNCRSHHHKTNKVILVVLPFTLGILLVLFVIRVSYHLCRSSHTKENQAAESQAQNYFAIWSFDGKMVYENIIEATEEFDNKHLIGVGGHGCVYKVELPTSQVVAVKKLHSVPNEEISSLKAFTSEIQALTEIRHHNIVKLYGFCSHSRYSFLVYEFLEKGSVEMILKNDEQATKFDWNRRVNVVKGIANALSYMHCDCRPPIVHRDISSKNILLDLEYVAHVSDFGTAKLLNPNSSNXTSFAGTFGYVAPELAYTMKVNEKCDVHSFGVLALEILFGKHPSDVMSSSWIVVASTLDNMSLMDKLDQRLPHPVYPIVKDVLSIARIAIGCLNESPRSRPTMEQVVKELVGSIPPSIGNLGNLETVQFSKNKLSGPIPPTIGNLSKVKSLYLHSNELSGNIPIEMNRLTNLEMLQLFNNHFIGHLPQNICISGKLSKFSASNNNFAGPVPKSLKNCSSLIRVRLQQNQLTGNITDEFGVYPNLDYMELSENNFYGHLSPNWGKCYSLTSLKISNNKLSGVIPQELGEAINLHVLDLSSNHLIGKLPNELGKLTSLIKLLISNNHLSENVPVQITSLPKLETLDLGGNNFSGFITGQLGRLPMLLNLNLSQNNFMGNIPVEFGIFKVLRSLDLSGNFLGGTIPAMLGQLKYLEILNLSHNSLSGTIPSSFDGMLSLTYIGISYNQLEGPLPNIPAFHYATIEALRNNKCLCGNVSGLEPCPSSNSTEEFDNKHLIGVGGHGCVYKAELPTGQVVAVKKLHSAPNEEISNLKAFTSEIQALTEIRHRNIVKLYGFCSHSRYSFLVYEFLEKGSVEMILKNNEQATKFDWNRRVNVVKGVANALCYMHCDCRPPIVHRDISSKNILLDLEYVAHVSDFGTAKLLNPNSTNWTSFAGTXLDMLLQVHSLSLNL 1735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3158g00003 1735 PRINTS Leucine-rich repeat signature 755 768 - -
Gabi3158g00003 1735 PRINTS Leucine-rich repeat signature 136 149 - -
Gabi3158g00003 1735 ProSitePatterns Protein kinases ATP-binding region signature. 1560 1583 IPR017441 GO:0005524
Gabi3158g00003 1735 Gene3D Ribonuclease Inhibitor 42 179 IPR032675 -
Gabi3158g00003 1735 Gene3D Ribonuclease Inhibitor 375 499 IPR032675 -
Gabi3158g00003 1735 SUPERFAMILY L domain-like 542 818 - -
Gabi3158g00003 1735 SUPERFAMILY L domain-like 270 498 - -
Gabi3158g00003 1735 Gene3D Transferase(Phosphotransferase) domain 1 985 1175 - -
Gabi3158g00003 1735 Gene3D Transferase(Phosphotransferase) domain 1 1633 1725 - -
Gabi3158g00003 1735 FunFam Leucine-rich repeat receptor protein kinase EMS1 1169 1254 - -
Gabi3158g00003 1735 Gene3D Ribonuclease Inhibitor 273 370 IPR032675 -
Gabi3158g00003 1735 SMART LRR_typ_2 683 707 IPR003591 -
Gabi3158g00003 1735 SMART LRR_typ_2 445 469 IPR003591 -
Gabi3158g00003 1735 SMART LRR_typ_2 1186 1210 IPR003591 -
Gabi3158g00003 1735 SMART LRR_typ_2 1474 1497 IPR003591 -
Gabi3158g00003 1735 SMART LRR_typ_2 349 373 IPR003591 -
Gabi3158g00003 1735 SMART LRR_typ_2 253 277 IPR003591 -
Gabi3158g00003 1735 SMART LRR_typ_2 301 325 IPR003591 -
Gabi3158g00003 1735 SMART LRR_typ_2 1234 1258 IPR003591 -
Gabi3158g00003 1735 SMART LRR_typ_2 1402 1426 IPR003591 -
Gabi3158g00003 1735 SMART LRR_typ_2 659 682 IPR003591 -
Gabi3158g00003 1735 SMART LRR_typ_2 205 229 IPR003591 -
Gabi3158g00003 1735 SMART LRR_typ_2 133 157 IPR003591 -
Gabi3158g00003 1735 SMART LRR_typ_2 397 421 IPR003591 -
Gabi3158g00003 1735 SMART LRR_typ_2 755 778 IPR003591 -
Gabi3158g00003 1735 ProSiteProfiles Protein kinase domain profile. 906 1183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3158g00003 1735 Gene3D Ribonuclease Inhibitor 180 272 IPR032675 -
Gabi3158g00003 1735 FunFam Uncharacterized protein 537 835 - -
Gabi3158g00003 1735 ProSiteProfiles Protein kinase domain profile. 1554 1735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3158g00003 1735 Pfam Leucine Rich Repeat 135 157 IPR001611 GO:0005515
Gabi3158g00003 1735 Pfam Leucine Rich Repeat 1356 1378 IPR001611 GO:0005515
Gabi3158g00003 1735 FunFam MDIS1-interacting receptor like kinase 2 985 1180 - -
Gabi3158g00003 1735 ProSiteProfiles Leucine-rich repeat profile. 637 660 IPR001611 GO:0005515
Gabi3158g00003 1735 FunFam Nuclear pore complex protein NUP107 42 198 - -
Gabi3158g00003 1735 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1030 1042 IPR008266 GO:0004672|GO:0006468
Gabi3158g00003 1735 Gene3D Ribonuclease Inhibitor 1258 1551 IPR032675 -
Gabi3158g00003 1735 Gene3D Phosphorylase Kinase; domain 1 1552 1632 - -
Gabi3158g00003 1735 Gene3D Phosphorylase Kinase; domain 1 866 984 - -
Gabi3158g00003 1735 FunFam Leucine-rich repeat receptor protein kinase MSP1 869 984 - -
Gabi3158g00003 1735 FunFam Uncharacterized protein 1256 1554 - -
Gabi3158g00003 1735 Gene3D Ribonuclease Inhibitor 500 830 IPR032675 -
Gabi3158g00003 1735 ProSiteProfiles Leucine-rich repeat profile. 135 157 IPR001611 GO:0005515
Gabi3158g00003 1735 ProSitePatterns Protein kinases ATP-binding region signature. 912 935 IPR017441 GO:0005524
Gabi3158g00003 1735 Gene3D Ribonuclease Inhibitor 1176 1257 IPR032675 -
Gabi3158g00003 1735 FunFam MDIS1-interacting receptor like kinase 2 isoform A 199 294 - -
Gabi3158g00003 1735 SUPERFAMILY Protein kinase-like (PK-like) 889 1175 IPR011009 -
Gabi3158g00003 1735 SUPERFAMILY L domain-like 46 319 - -
Gabi3158g00003 1735 Pfam Leucine rich repeat 614 672 IPR001611 GO:0005515
Gabi3158g00003 1735 Pfam Leucine rich repeat 1453 1511 IPR001611 GO:0005515
Gabi3158g00003 1735 Pfam Leucine rich repeat 734 792 IPR001611 GO:0005515
Gabi3158g00003 1735 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1678 1690 IPR008266 GO:0004672|GO:0006468
Gabi3158g00003 1735 FunFam MDIS1-interacting receptor like kinase 2 isoform A 436 536 - -
Gabi3158g00003 1735 Pfam Leucine rich repeat N-terminal domain 45 82 IPR013210 -
Gabi3158g00003 1735 SUPERFAMILY RNI-like 1176 1521 - -
Gabi3158g00003 1735 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 423 1175 - -
Gabi3158g00003 1735 FunFam MDIS1-interacting receptor like kinase 2 isoform A 295 392 - -
Gabi3158g00003 1735 SMART LRR_sd22_2 397 423 - -
Gabi3158g00003 1735 SMART LRR_sd22_2 157 189 - -
Gabi3158g00003 1735 SMART LRR_sd22_2 205 231 - -
Gabi3158g00003 1735 SMART LRR_sd22_2 659 678 - -
Gabi3158g00003 1735 SMART LRR_sd22_2 349 375 - -
Gabi3158g00003 1735 SMART LRR_sd22_2 133 155 - -
Gabi3158g00003 1735 SMART LRR_sd22_2 301 327 - -
Gabi3158g00003 1735 SMART LRR_sd22_2 445 471 - -
Gabi3158g00003 1735 SMART LRR_sd22_2 1186 1212 - -
Gabi3158g00003 1735 SMART LRR_sd22_2 253 279 - -
Gabi3158g00003 1735 SUPERFAMILY Protein kinase-like (PK-like) 1549 1721 IPR011009 -
Gabi3158g00003 1735 FunFam Leucine-rich repeat receptor protein kinase MSP1 1548 1632 - -
Gabi3158g00003 1735 Pfam Protein kinase domain 1555 1720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3158g00003 1735 Pfam Protein kinase domain 907 1173 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3158g00003 Gabi-Chr3158 55377 65359 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3158g00003 563 797 Receptor kinase-like Gene Family AT4G08850 39.916 2.64e-36 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3158g00003 Pkinase 5.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3158g00003 - - vun:114189705 1758.81