Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3158g00002 ATGGCAACTGATATGCGGAGGCTTGTTGGAACGAGTGAGGATGATGAAGAAGAAATGGGAATGGATGTTAAAGATGAGGATGATGATGATGATGATTATGAGGAAAATGGAGGTGATCATGGAAATGCGATAAGGATGGTAGAGATTGATGGTGGGAATGTGATAGGGACTGTCACTGGTGACAACAGGTTTGAACAGCATCAGCAGTTTCAAGAGCAAGTTGGCACCCCAGGGGGAGGTACTCGAAGATCAAGGCCAATTGAAGAGAAAGAGAGAACAAAGCTAAGAGAGAGGCGTCGGAGGGCTATCACTGCAAGGATCTTGGCAGGACTTCGCAGGCATGGCAACTACAATCTTAGAGTTAGAGCTGACATAAACGATGTCATTGCTGCTCTTGCAAGGGAAGCAGGATGGGTGGTTCTTCCAGATGGCACTACTTTTCCCTCTAGATCTCAGGGTCAAATGCCAGCTGGTGGTAATTCTACAGTTGTCACTTCGTCTTCTTCCCATGCACCTTCACAACAGACTCCATCTGCTTCTGTCAGGGGAGTTGCTTCTGGCTATAGGAGCACATTAGAGTATACTGCATGTCAGATGAAGGGTGTTTTTATGCCAGCTCCATCTCCTTATGATCTATCCTCGAGTTCCCGGTCTCAAACATCCATGTTGGGGGATGGAGAAGCACAAAGAGACAATCATCCTCTCGTTGTTGGTTCAATGGATAATGTTGATGATAAACAGATTGTTGACACAATCCCCAGATTAGCAGAGCGTGATTTGGCTGGTACCCCATATGTTCCAGTTTACGTTATGCTCCCTTTGGGGGTGATCAATATTAAATGTGATCTTGTTGATCCGGACGCTCTACTAAAGCAGCTGAGGGTGTTGAAATCGGTAAATGTTGATGGTGTTATGGTAGACTGTTGGTGGGGAATAGTGGAGGCACATGCTCCACAAGAGTATAATTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCATGAACTTAAGCTTAAGCTGCAGGTTGTGATGTCTTTTCATGAATGTGGAGGCAATTTTGGTGATGATGTTTGTATTCCATTACCTCATTGGGTTGCAGAAATTGGCAGGAGCAATCCTGACATTTTTTTTACTGATAGAGAGGGAAGGCACAACCCTGAATGTCTTTCTTGGGGAATAGATAAGGAACGGGTTTTAAGAGGTCGGACTGCTATGGAGGTTTATTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAGTATTTCGAGGATGGCTTCATCTCCATGATTGAAATTGGACTAGGTCCTTGTGGAGAGCTAAGATACCCATCTTGTCCTGTAAAGCATGGCTGGAGATATCCTGGTATTGGTGAATTCCAGTGCTATGATCAGTATATGTTGAAAAGTCTTAGGAAAGCAGCAGAAGCAAGGGGGCACGCTATTTGGGCCAGAGGGCCAGATAATGTGGGTACCTATAATTCTAAGCCACAAGAAACAGGTTTCTTTTGTGATGGAGGAGATTATGATGGCTTCTATGGCAGGTTTTTTCTTAGCTGGTACTCTCAGGTTTTAGTTGATCATGGAAACCGGGTACTTTCTTTGGCAAAATTAGCTTTTGAAGGATCCTGCATTGCTGCAAAGCTCTCAGGTCTTTACTGGTGGTACAAGACAGCCAGCCATGCTGCTGAACTAACTGCTGGGTATTATAATCCATGCAATCGTGATGGCTATGCTGCAATTATGGCAATGTTAAAGAGAAATGGAGTCAGCTTAAACATTGTTTGTGCTGACTTACAAACATTGAACCAACATGAGGTCTTTCCAGAGACATTTGCAGATCCTGAGGGATTATTGTGGCAAGTTCTGAACGCGGGTTGGGATGTTGGCATTCCAGTTGCTGGTGAGAATGGACTTACTTGCCTAAACAGAGTTAGCTATAACAAGGTTTTGGATAATGCCAAGCCCATTAATGATCCAGATGGAAGGCACTTTTCATCCTTTACTTACCTGAGGCTTAGTCCACTTCTTATGGAACGACAAAACTTCATAGAATTTGAACGATTTGTCAAGAGAATGCATGGGGAAGCTGTTCTTGATCTTCAGGTATAG 2112 0.4384 MATDMRRLVGTSEDDEEEMGMDVKDEDDDDDDYEENGGDHGNAIRMVEIDGGNVIGTVTGDNRFEQHQQFQEQVGTPGGGTRRSRPIEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGQMPAGGNSTVVTSSSSHAPSQQTPSASVRGVASGYRSTLEYTACQMKGVFMPAPSPYDLSSSSRSQTSMLGDGEAQRDNHPLVVGSMDNVDDKQIVDTIPRLAERDLAGTPYVPVYVMLPLGVINIKCDLVDPDALLKQLRVLKSVNVDGVMVDCWWGIVEAHAPQEYNWNGYKRLFQMVHELKLKLQVVMSFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTAMEVYFDFMRSFRVEFDEYFEDGFISMIEIGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYMLKSLRKAAEARGHAIWARGPDNVGTYNSKPQETGFFCDGGDYDGFYGRFFLSWYSQVLVDHGNRVLSLAKLAFEGSCIAAKLSGLYWWYKTASHAAELTAGYYNPCNRDGYAAIMAMLKRNGVSLNIVCADLQTLNQHEVFPETFADPEGLLWQVLNAGWDVGIPVAGENGLTCLNRVSYNKVLDNAKPINDPDGRHFSSFTYLRLSPLLMERQNFIEFERFVKRMHGEAVLDLQV 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3158g00002 703 MobiDBLite consensus disorder prediction 70 94 - -
Gabi3158g00002 703 SUPERFAMILY (Trans)glycosidases 262 699 IPR017853 -
Gabi3158g00002 703 MobiDBLite consensus disorder prediction 209 237 - -
Gabi3158g00002 703 Pfam Glycosyl hydrolase family 14 269 688 IPR001554 GO:0000272|GO:0016161
Gabi3158g00002 703 PRINTS Plant beta-amylase signature 684 698 IPR001371 GO:0000272|GO:0016161
Gabi3158g00002 703 PRINTS Plant beta-amylase signature 669 683 IPR001371 GO:0000272|GO:0016161
Gabi3158g00002 703 PRINTS Plant beta-amylase signature 426 435 IPR001371 GO:0000272|GO:0016161
Gabi3158g00002 703 Gene3D Glycosidases 256 702 - -
Gabi3158g00002 703 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 543 559 IPR001554 GO:0000272|GO:0016161
Gabi3158g00002 703 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 300 314 IPR001554 GO:0000272|GO:0016161
Gabi3158g00002 703 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 321 339 IPR001554 GO:0000272|GO:0016161
Gabi3158g00002 703 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 343 364 IPR001554 GO:0000272|GO:0016161
Gabi3158g00002 703 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 436 458 IPR001554 GO:0000272|GO:0016161
Gabi3158g00002 703 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 560 571 IPR001554 GO:0000272|GO:0016161
Gabi3158g00002 703 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 509 528 IPR001554 GO:0000272|GO:0016161
Gabi3158g00002 703 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 578 601 IPR001554 GO:0000272|GO:0016161
Gabi3158g00002 703 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 618 640 IPR001554 GO:0000272|GO:0016161
Gabi3158g00002 703 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 215 696 IPR001554 GO:0000272|GO:0016161
Gabi3158g00002 703 MobiDBLite consensus disorder prediction 15 36 - -
Gabi3158g00002 703 MobiDBLite consensus disorder prediction 1 43 - -
Gabi3158g00002 703 MobiDBLite consensus disorder prediction 209 226 - -
Gabi3158g00002 703 Pfam BES1/BZR1 plant transcription factor, N-terminal 80 222 IPR008540 -
Gabi3158g00002 703 MobiDBLite consensus disorder prediction 148 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3158g00002 Gabi-Chr3158 5865 12629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3158g00002 1 700 Glycoside Hydrolase AT2G45880 65.483 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Gabi3158g00002 Glyco_hydro_14 9.2e-105 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3158g00002 K01177 - gmx:100805560 1198.34