Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3154g00035 ATGGAGATTCAGCAGCAGAGTGTGAAGCAGCTCATGGTTCACCATAACACACCCAAGAAATTATGGTTTTCACACAAAGGAGCGAAAGAATCAGAGAAATTTTCAGAACCAATCAACGGTACTCCTCCAAGGCTGAGATGGAAGAAGATCTTCTTCCACCATCAAAGGTCACCACCACCACCATCTTCAAAACCCAACAAAACCCAAAACCCCCCTGAAGAGTTCCTCTGCCCCATTTCAGGTTCTCTCATGGAAGACCCCGTGATCGTTTCCTCAGGCCACTCCTTCGACCGTTCCTCCGTTCAAGCCTGCAAAAATCTCAACTTTACACCTCAACTCTCCGATGGAACCATGCCCGATTTCTCCACCGTGATCCCCAACCTCGCCCTCAAATCCTCCATTCTCAAATGGTGCCAGACCACAACCTTTTCACTCCCACACAATCCGACCACCTCTGCAGAGAACCTCGTACGAACCTTAATGGTTTCGAAGAAACCAGACACAAACGTAGGTGCCGTCGAGGCTTCGGAGAAAAAGTTGATGATTGAAGGAGTGAAGGAAAACCCACCATTGGAATTCTTCAACCATGCAGAAACCGAAGTCCCTATTCGACAAACACACTTGTATTCGAGTTCATCCGAGGAATCCATAGCCACAGCTTCAACCTCAGCTTCAACCCCACCTCTTCAACTCTCAACTCGACCCAGTTGCTGCTCCTCTTCTTCACCTTCACCTTCTTCCTCAGAAATCGAACCTTCAACAACAACAACAACAATTACACCTGAAGAAGAAGAAATCATGGCAAAACTAAGAAACCCACAAGTTTTCATAATCGAAGAAGCACTGGTTTCGCTGAGAAAAATAACAAGAACAAAAGAAGAAAGAAGGGTTCAACTTTGCACAACCAAGTTACTCTCTTCTCTACGTTCCCTAATTGTGTCAAAGTACACCAACGTTCAGGTCAACGCTCTCGCTTCAGTGGTCAACCTCTCGTTGGAGAAGATGAACAAGGTGAAGATCGTGCGGTCAGGGATCGTTCCACCGTTGATCGATGTTTTGAAGTGTGGATCCTCTGAGGCACAGGAACACGCTTCCGGTGCACTCTTCAGTTTGGCACTCGACGACGACAACAAAACCGCCATTGGAGTTCTCGGTGCTCTTTCGCCGTTGATTCACATGCTCCGATCCGAGAGCGAGCGAACTCGCCATGACTCGGCCTTGGCGCTTTATCATTTGTCTTTGGTGCAGAGCAACCGGGCCAAGATGGTTAAACTCGGGTCGGTTCCTGTTCTTTTGGGCATGGTTAAGTCGGGTCATATGACGGGTCGGATCCTGTTAATATTGGGTAATTTGGGTCACGGGTCGGATGGGCGGGCTGCAATGTTGGATGCGGGTGCGGTTGAATGCTTGGTGGGGCTGTTGAGTAGGACCGAGTTGGGGTCCGGGTCGACTCGGGAGAGTTGTGTGGCGGTTATGTATGCACTGAGTCACGGCGGGTTGAGGTTTAAGGCGGTGGCTAAGGCGGCCGGAGTGGTGGAAGTGATGCAAAAGGTGGAGAAGATGGGGAGTGAGAGGGCTAAGGAGAAGGTGAGAAGGATATTGGAGATGATGAGAGGTAAGGATAAAGAAGAGGAGGATGTGGATTGGGAGGAGCTACTTGACTCGGGGTTGGGTCATCGAACTCGGGGTCGACTCAGTAGTGGGTTGGACGAGTCCACTTCTAACTCGGTCTGA 1734 0.4965 MEIQQQSVKQLMVHHNTPKKLWFSHKGAKESEKFSEPINGTPPRLRWKKIFFHHQRSPPPPSSKPNKTQNPPEEFLCPISGSLMEDPVIVSSGHSFDRSSVQACKNLNFTPQLSDGTMPDFSTVIPNLALKSSILKWCQTTTFSLPHNPTTSAENLVRTLMVSKKPDTNVGAVEASEKKLMIEGVKENPPLEFFNHAETEVPIRQTHLYSSSSEESIATASTSASTPPLQLSTRPSCCSSSSPSPSSSEIEPSTTTTTITPEEEEIMAKLRNPQVFIIEEALVSLRKITRTKEERRVQLCTTKLLSSLRSLIVSKYTNVQVNALASVVNLSLEKMNKVKIVRSGIVPPLIDVLKCGSSEAQEHASGALFSLALDDDNKTAIGVLGALSPLIHMLRSESERTRHDSALALYHLSLVQSNRAKMVKLGSVPVLLGMVKSGHMTGRILLILGNLGHGSDGRAAMLDAGAVECLVGLLSRTELGSGSTRESCVAVMYALSHGGLRFKAVAKAAGVVEVMQKVEKMGSERAKEKVRRILEMMRGKDKEEEDVDWEELLDSGLGHRTRGRLSSGLDESTSNSV 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3154g00035 577 Gene3D - 260 536 IPR011989 -
Gabi3154g00035 577 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842|GO:0016567
Gabi3154g00035 577 SMART Ubox_2 74 137 IPR003613 GO:0004842|GO:0016567
Gabi3154g00035 577 FunFam RING-type E3 ubiquitin transferase 261 537 - -
Gabi3154g00035 577 SUPERFAMILY ARM repeat 268 535 IPR016024 -
Gabi3154g00035 577 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 385 427 IPR000225 GO:0005515
Gabi3154g00035 577 SUPERFAMILY RING/U-box 68 142 - -
Gabi3154g00035 577 MobiDBLite consensus disorder prediction 558 577 - -
Gabi3154g00035 577 Pfam Armadillo/beta-catenin-like repeat 374 413 IPR000225 GO:0005515
Gabi3154g00035 577 Pfam Armadillo/beta-catenin-like repeat 336 372 IPR000225 GO:0005515
Gabi3154g00035 577 SMART arm_5 374 414 IPR000225 GO:0005515
Gabi3154g00035 577 SMART arm_5 333 373 IPR000225 GO:0005515
Gabi3154g00035 577 SMART arm_5 454 497 IPR000225 GO:0005515
Gabi3154g00035 577 SMART arm_5 415 453 IPR000225 GO:0005515
Gabi3154g00035 577 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 344 381 IPR000225 GO:0005515
Gabi3154g00035 577 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 146 IPR013083 -
Gabi3154g00035 577 PANTHER U BOX DOMAIN-CONTAINING 55 538 - -
Gabi3154g00035 577 MobiDBLite consensus disorder prediction 208 262 - -
Gabi3154g00035 577 Pfam U-box domain 72 140 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3154g00035 Gabi-Chr3154 352013 354669 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3154g00035 1 576 U-box Gene Family AT5G40140 52.397 7.10e-180 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3154g00035 - - lja:Lj2g3v1020040.1 722.235