Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3154g00008 ATGGCATTGGAGTGGAGTTTTCACTCTCCAAATGGTATTTTCATGATGCTATTGTTTTGTCTTGGCATCATCCTTGTAAGTTCGATTAATGAAGAGGGTTCAAGTCTTTTGAAGTTCAAAAGTTCCCTTCTTGACCCAAAAAACAATCTTCAAAACTGGAACTCTTCTGATTTGACTCCTTGCAATTGGACTGGTGTGTATTGCACTGGTTCAATGGTAACTTCTGTAAAACTTTACCACCTCAATCTGTCTGGTACTTTATCTCCAAGCATATGTAACCTTCCAAGGCTACTTGAGTTGAATCTGTCAAAAAATTTCATCTCTGGCCCTATTCCTGAGGGTTTTGTTGACTGTCATAGTTTAGAGATTTTAGACCTTTGTACTAATAGGCTTCATGGACAACTTCAGACCCCTATTTGGAAAATCACAACACTTATAAAGCTTTACCTGTGTGAAAATTATATGTTTGGTGAAGTGCCAGAAGAGCTTGGGAATTTAAAATCACTTGAGGAGCTATTCATTTATAGCAACAATTTAACTGGACAAATTCCCACATCAATCAGCAAGTTGAAGCAGCTTAGAGTTATAAGGGCAGGCCTAAATGGCCTCTCAGGGCCAATACCTGCAGAAATTAGTGAGTGTGAGAGCTTGGAGATATTGGGTTTGGCACAGAATCAACTAGAAGGTTCCATTCCAAGGGAGCTTCAAAAGCTTCAGAACCTTACCAGTTTGATTCTATGGCAAAACTCTTTATCTGGGGATATTCCTCCTGAGATTGGAAATATTAGTAGCCTTGAGTTGCTAGCTTTGCATCAAAACTTATTCAGTGGTGTCCCTAAGGAGCTGGGAAAGTTATCCAGGTTGAAGAAGTTGTACATATACACCAACCAGTTGAATGGAACAATTCCACCAGAGCTAGGGAACTGCACAAGTGCTATTGAGATAGATCTATCTGAAAACCGTTTGATTGGGATCATTCCCAAAGAGTTGGGGAAGATCTCTAATCTCACCTTGCTTCATCTATTTGAAAACCATCTGCAGGGTCATATTCCATGGGAGCTTGGGCAGTTGAGGATGCTAAAAAATCTAGACCTTTCAATGAATAACTTAACAGGTACAATTCCACTTGAGTTTCAAAATCTTACCTACATGGAGGATTTGCAGCTATTTGATAATCAACTTGAGGGTGTGATTCCTCCTCATCTTGGAGCTGTTAGAAACCTTACCATTCTTGACATATCAGCAAATAATCTTGTTGGTATGATACCTCTCCATCTTTGTGAATATCAGAAGCTACAATTTCTGAGCCTTGGGTCAAATAGGTTGTTTGGGAACATTCCTTACAGCCTGAAAACTTGTAAGTCTCTGGTGCAGCTTATGTTGGGGGATAACCAGTTAACAGGAAGTTTACCTGTTGAACTGTATGAACTTCACAATCTAACTGCACTTGAACTTTATCAGAACCAGTTCTCTGGGCTAATAAACCCTGGGATAGGTCAACTTAAAAAAGTAGAGAGGCTTCTCTTGTCAGATAATTATTTTACTGGGTATCTCCCTTCTGAAATTGGAAATTTGGCACAACTTGTCACATTCAATGTTTCATCTAATCTTTTCAGTGGTAGCATTCCTCGTGAGTTGGGAAACTGTCTAAAACTGCAAAGACTTGATCTTAGCAGGAACAAGTTCACTGGCATGCTTCCAAATGAAATTGGCAATCTGGTGAATTTGGAGCTGTTGAAAGTTTCTGATAATGCACTCTCTGGAGAAATTCCAGGCACTTTAGGGGATCTTATTCGTCTCACAGAGCTGGAGCTAGGTGGCAACCAATTTTCAGGAAGCATCTCTTATCATTTGGGAAGACTTGCTGCTCTTCAGATTGCACTTAACTTGAGCCACAACAAACTTTCTGGCACAATTCCTGATAGCTTGGGGAACTTGCAAATGCTGGAATCCCTTTACTTGAATGACAATGAACTTGTTGGTGAAATTCCTGCATCAATTGGTCAGCTTCCAAGTCTTTTAGTATGCAATGTATCTAACAACAAGCTGGTAGGAACTGTTCCTGACACCACTGCATTTAGGAAGATGGATTCCACAAATTTTGCTGGAAATAATGGATTGTGCCGTGTTGGTACTTATCATTGTCATCCATCTGAAGCTTCATCTCATCATGCAAAACCAAGCTGGATAAAAGATGGTTCATCAAGGGAAAAGATAGTGAGCATTGCTTCTGGGGTGGTTGGATTAGTTTCTCTTGTTTTCATAGTGTGTATATGTGTTGCAATGAGGCGTCGTGGCACTGCTTTTGTTTCACTTGAAGGAGAAACAAAGCCTCATGTTCTTGATAACTATTACTTTCCTAAAGAAGGCTTTACTTACCAGGATCTCTTGGAAGCCACTGGCAATTTTTCACAAGATGCAGTTATTGGAAGAGGAGCTTGTGGAACTGTCTACAAGGCTGTTATGAATGATGGTGAAGTCATTGCTGTCAAGAAGCTGAATTCACATGGAGAAGGAGCAAATGTTGACAGAAGCTTCTTTGCAGAGATTTCAACCCTTGGAAAGATCAGGCACAGGAACATTGTGAAGCTGTATGGATTTTGTTATCATGAGGATTCTAATCTTCTTTTATATGAATACATGGAAAATGGAAGCCTTGGGGAACAACTTCATTCCAATGCAAGCACATGTGCACTGGATTGGAATAGCCGGTATAAAATTGCTCTTGGAGCAGCAGAAGGCTTATGCTATCTTCATTATGATTGTAAACCTCAAATCATCCATCGTGATATAAAGTCAAACAACATATTACTTGATGAAGTGTTTCAGGCTCATGTTGGAGACTTTGGCTTGGCAAAGTTGATTGACTTTTCCTACTCAAAATCCATGTCTGCTGTGGCAGGTTCATATGGCTACATTGCCCCAGAATATGCTTACACCATGAAGGTGACTGAGAAATGTGACATCTATAGTTTTGGGGTAGTTTTGCTGGAACTAGTTATTGGGAGGTCACCTGTTCAACCTTTGGAACAGGGTGGTGATTTGGTGACATGGGTGAGAAGAGCAATTCAAGCATCTATACCAACATCTGAGTTATTTGACAAGAGATTGAATCTGAATGAACAAAGAACAGTTGAAGAGATGTCTCTTATTCTAAAAATTGCTCTCTTTTGCACAAGTACATCTCCACTTAATAGGCCTACAATGAAAGAGGTCATTGCAATGTTGATTGATGCTAGGGAATACGTCAGCAATACACCAACCTCTCCTACATCAGAATCTACACTGGATGAAGATCAAGTTGCTTCTTCCAAAGATGGTGGTCCTTGA 3330 0.4 MALEWSFHSPNGIFMMLLFCLGIILVSSINEEGSSLLKFKSSLLDPKNNLQNWNSSDLTPCNWTGVYCTGSMVTSVKLYHLNLSGTLSPSICNLPRLLELNLSKNFISGPIPEGFVDCHSLEILDLCTNRLHGQLQTPIWKITTLIKLYLCENYMFGEVPEELGNLKSLEELFIYSNNLTGQIPTSISKLKQLRVIRAGLNGLSGPIPAEISECESLEILGLAQNQLEGSIPRELQKLQNLTSLILWQNSLSGDIPPEIGNISSLELLALHQNLFSGVPKELGKLSRLKKLYIYTNQLNGTIPPELGNCTSAIEIDLSENRLIGIIPKELGKISNLTLLHLFENHLQGHIPWELGQLRMLKNLDLSMNNLTGTIPLEFQNLTYMEDLQLFDNQLEGVIPPHLGAVRNLTILDISANNLVGMIPLHLCEYQKLQFLSLGSNRLFGNIPYSLKTCKSLVQLMLGDNQLTGSLPVELYELHNLTALELYQNQFSGLINPGIGQLKKVERLLLSDNYFTGYLPSEIGNLAQLVTFNVSSNLFSGSIPRELGNCLKLQRLDLSRNKFTGMLPNEIGNLVNLELLKVSDNALSGEIPGTLGDLIRLTELELGGNQFSGSISYHLGRLAALQIALNLSHNKLSGTIPDSLGNLQMLESLYLNDNELVGEIPASIGQLPSLLVCNVSNNKLVGTVPDTTAFRKMDSTNFAGNNGLCRVGTYHCHPSEASSHHAKPSWIKDGSSREKIVSIASGVVGLVSLVFIVCICVAMRRRGTAFVSLEGETKPHVLDNYYFPKEGFTYQDLLEATGNFSQDAVIGRGACGTVYKAVMNDGEVIAVKKLNSHGEGANVDRSFFAEISTLGKIRHRNIVKLYGFCYHEDSNLLLYEYMENGSLGEQLHSNASTCALDWNSRYKIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDEVFQAHVGDFGLAKLIDFSYSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVIGRSPVQPLEQGGDLVTWVRRAIQASIPTSELFDKRLNLNEQRTVEEMSLILKIALFCTSTSPLNRPTMKEVIAMLIDAREYVSNTPTSPTSESTLDEDQVASSKDGGP 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3154g00008 1109 Gene3D Ribonuclease Inhibitor 27 177 IPR032675 -
Gabi3154g00008 1109 ProSiteProfiles Protein kinase domain profile. 803 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3154g00008 1109 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Gabi3154g00008 1109 MobiDBLite consensus disorder prediction 1084 1098 - -
Gabi3154g00008 1109 ProSitePatterns Serine/Threonine protein kinases active-site signature. 926 938 IPR008271 GO:0004672|GO:0006468
Gabi3154g00008 1109 Gene3D Ribonuclease Inhibitor 280 384 IPR032675 -
Gabi3154g00008 1109 Gene3D Ribonuclease Inhibitor 178 279 IPR032675 -
Gabi3154g00008 1109 SMART LRR_typ_2 166 190 IPR003591 -
Gabi3154g00008 1109 SMART LRR_typ_2 357 380 IPR003591 -
Gabi3154g00008 1109 SMART LRR_typ_2 525 549 IPR003591 -
Gabi3154g00008 1109 SMART LRR_typ_2 551 572 IPR003591 -
Gabi3154g00008 1109 SMART LRR_typ_2 477 501 IPR003591 -
Gabi3154g00008 1109 SMART LRR_typ_2 573 597 IPR003591 -
Gabi3154g00008 1109 SMART LRR_typ_2 238 262 IPR003591 -
Gabi3154g00008 1109 SMART LRR_typ_2 94 118 IPR003591 -
Gabi3154g00008 1109 SMART LRR_typ_2 285 309 IPR003591 -
Gabi3154g00008 1109 SMART LRR_typ_2 646 670 IPR003591 -
Gabi3154g00008 1109 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 329 1077 - -
Gabi3154g00008 1109 Pfam Protein kinase domain 804 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3154g00008 1109 SMART serkin_6 803 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3154g00008 1109 SUPERFAMILY Protein kinase-like (PK-like) 782 1076 IPR011009 -
Gabi3154g00008 1109 SUPERFAMILY RNI-like 362 685 - -
Gabi3154g00008 1109 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 769 880 - -
Gabi3154g00008 1109 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 405 719 - -
Gabi3154g00008 1109 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 279 381 - -
Gabi3154g00008 1109 MobiDBLite consensus disorder prediction 1084 1109 - -
Gabi3154g00008 1109 FunFam Predicted protein 183 278 - -
Gabi3154g00008 1109 Gene3D Transferase(Phosphotransferase) domain 1 881 1099 - -
Gabi3154g00008 1109 Gene3D Phosphorylase Kinase; domain 1 771 880 - -
Gabi3154g00008 1109 Pfam Leucine rich repeat 551 610 IPR001611 GO:0005515
Gabi3154g00008 1109 SUPERFAMILY L domain-like 44 394 - -
Gabi3154g00008 1109 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 881 1093 - -
Gabi3154g00008 1109 Gene3D Ribonuclease Inhibitor 385 724 IPR032675 -
Gabi3154g00008 1109 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 29 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3154g00008 Gabi-Chr3154 95687 100391 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3154g00008 23 1080 Receptor kinase-like Gene Family AT1G73080 37.903 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3154g00008 Pkinase 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3154g00008 - - gmx:100818311 1917.51