Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi3154g00005 | ATGCTTATATTAGTGGGAAACGTGCAAGGAACAATGAGTTCTCTTGCTTCACCAGTGAGTTTAGGGAGCCTCATGGGTGTGAGTTCTTGTGGAAGGTCCCATTCTGGTGTGAGGAGAGTCTCTCTTTCTAGAGGGAAATGTAAGGGTAACAAGACATGGCATTGTGTCTCTTTGTCTGTATGTAGATATTCAGTGACCACAACTGATTTTGTTGCTGACCAAGGCAATTCAGTGTCCCTTGATTCTAACAGTAATAGTAAAAGTGGAGGAGATGATAGTGCTGGTTTTGTCCTTAAGCCTCCTCCTAGGCCTGTGTTGAAGTCCCCAGGCAATAAGGTTGACCCCATTTTAGGTTCGAATTCGGAATCTTGGGCCCCCTCTAGGGATACTAAGGAACCTCCTGAGGATGTAGAGGAGAGGAATAAAGTGATTGAGTCGCTTGGAGAGGTGTTGGAGAAGGCTGAAAAGCTGGAAAATCCTAAGTTGGATGGTGAAAGAAATAATGGGTCAGTAAATAAACCAGTAAGATCCAATACAAATGCTAATCCTAAGGCTGATAAACCAGTAGATTCAACAAAAACCCAGAAGGCTAAAACATTGAAGAGTGTATGGCGTAAAGGGGACACGGTCGCAGCTGTGCAGAAGGTTGTGAAGGAAGTACCCAAGCCTAGTATCAAGAATGAAGGGGAGAAATCTCAAACAGGGGGAGGGGTGAAGGTAACATCACAATCTCGTGCTCCTCAGCCACCTTCAAAACCTTCACCAATGTTACAAGCTAAACCATCTATAGCTCCCCCACCCGTTAAAAAACCTGTTGTCTTGAGGGATAAGGATGCAGCTGAAACATCTGTTAAATCTAAAGAAAGGAAGGGCCCCATCTTGATTGATAAGTTTGCTTCCAAGAAACCAGTAGTTGATCCTGTAATTGCTCAAGCAGTTTTAGCCCCTTCAAAACCGGGGAAGGCCCCTCCCCCGGGAAAGTTTAAAGATGATTACCGGAAGAAAGGTGGTCCGGCTGGGGGAGGACCCAGAAGACGAATAGTAGATGATGGGATACCTGATGAGGACACATCAGAACTGAATGTTTCTATTCCTGGTGCTGCAACAGCAAGAAAAGGAAGGAAGTGGAGTAAAGCAAGTCGAAAGGCAGCAAGACTTCAGGCTGCCAAGGATGCAGCTCCTGTCAAAGTAGAAATTCTAGAGGTCAGTGACAAGGGTATGCTAGTGGAGGAGTTAGCCTACAATTTGGCAATCAGTGAAGGTGAAATCCTGGGTTTGCTATACGCCAAGGGGATTAAACCGGATGGTGTACAAACTTTAGACAATGATATGGTGAAGATGGTATGTAAAGAGTATAACGTGGAAGTCATGGATGTTGATCCTGTTGAAGTCGAAGGATTAGTGAAGAAAAGGGAAATTCTTGATGAAGATGACCTTGACAAACTCAAAGATAGGCCTCCTGTCGTTACTATCATGGGCCATGTAGATCATGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCTGCTTCTGAAGCTGGTGGTATCACACAGGGAATTGGGGCTTATAAAGTGCAAGTACCTGTTGATGGCAAACTGCTGCCCTGTGTTTTCCTTGACACTCCTGGACACGAGGCATTTGGGGCGATGAGAGCTCGTGGAGCAAGCGTAACAGACATTGCTATTATTGTTGTGGCTGCTGATGATGGTATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCGGCAGGGGTACCCATAATCGTTGCTATAAACAAGATAGATAAAGATGGAGCAAATCCAGAACGAGTTATGCAAGATCTTTCTTCAATTGGTTTAATGCCAGAAGACTGGGGTGGTGATGTCCCAATGGTTCAGATAAGTGCTCTTAAAGGGGAGAATGTGGATGATCTTTTGGAAACTATTATGCTTGTTGGCGAGTTGCAAGAGCTGAAAGCTAATCCTGATAGAAGTGCAAAGGGCACAGTCATTGAGGCAGGGCTAGATAAATCGAAAGGACCATTTGCTACATTTATTGTGCAGAATGGCACCCTTAGAAGGGGAGATATAGTAGTTTGTGGAGAAGCTTTTGGAAAGGTGCGGGCTTTATTCGATGATGGTGGAAAGCGTGTTGATGTAGCTACCCCCTCTATACCTGTACAGATTATTGGATTGAATAATGTTCCAATTGCTGGTGATGAATTTGAGGTTGTTGAGTCCCTTGATACTGCACGTGAAAAGGCAGAGTCCCGTGCTGAGTTATTGCGAAATGAACGTATTTTAGCAAAGGCAGGGGATGGCAAGGTCACCCTTTCTTCCTTAGCTTCTGCAGTTTCATCAGGAAAGCTTTCTGGACTAGACTTGCACCAACTAAATATTATCTTGAAGGTTGATCTTCAGGGAACTATTGAAGCTGTCAGACAAGCCTTGCAGGTGCTACCACAGGATAATGTCACACTTAAATTTTTGTTGGAAGCAACAGGCGATGTAAACACAAGTGATGTTGACCTTGCCATTGCGAGCAAAGCTATTATTTTGGGATTTAATGTCAAATTACCAGGCTCTGTGAAAAGCTATGCAGAGAATAAAGCCGTTGAGATTAGATTATATAGAGTAATTTATGAATTAATTGATGATGTGCGGAACGCAATGGAAGGTCTCCTGGAACCTGTTGAGGAACAAGTATCAATTGGCTCAGCACAAGTACGGGCCACATTCAGCAGCGGTAGTGGTCGTGTTGCTGGATGCATGGTTAAAGAGGGAAAGGTAGTAAAAGGCTGCGGTATTCGAGTCATTCGGAAGGGAAAAGTAATTCATGTTGGTATTCTTGATTCTTTGAGACGAGTGAAGGAGGTTGTCAATGAGGTAAATGCTGGTCTTGAGTGTGGACTTGGGTTAGAAGACTATGATGATTGGGAAGAGGGTGATATTCTTGAAGCCTTCAACACATTTGAGAAGAAGAGGACCCTTGAAGAGGCCTCAGTATCAATGGCAGCTGCAGTGGAGGGAGTAGGAGTTAAATTGTAG | 3042 | 0.4415 | MLILVGNVQGTMSSLASPVSLGSLMGVSSCGRSHSGVRRVSLSRGKCKGNKTWHCVSLSVCRYSVTTTDFVADQGNSVSLDSNSNSKSGGDDSAGFVLKPPPRPVLKSPGNKVDPILGSNSESWAPSRDTKEPPEDVEERNKVIESLGEVLEKAEKLENPKLDGERNNGSVNKPVRSNTNANPKADKPVDSTKTQKAKTLKSVWRKGDTVAAVQKVVKEVPKPSIKNEGEKSQTGGGVKVTSQSRAPQPPSKPSPMLQAKPSIAPPPVKKPVVLRDKDAAETSVKSKERKGPILIDKFASKKPVVDPVIAQAVLAPSKPGKAPPPGKFKDDYRKKGGPAGGGPRRRIVDDGIPDEDTSELNVSIPGAATARKGRKWSKASRKAARLQAAKDAAPVKVEILEVSDKGMLVEELAYNLAISEGEILGLLYAKGIKPDGVQTLDNDMVKMVCKEYNVEVMDVDPVEVEGLVKKREILDEDDLDKLKDRPPVVTIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVQVPVDGKLLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIVAINKIDKDGANPERVMQDLSSIGLMPEDWGGDVPMVQISALKGENVDDLLETIMLVGELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLRRGDIVVCGEAFGKVRALFDDGGKRVDVATPSIPVQIIGLNNVPIAGDEFEVVESLDTAREKAESRAELLRNERILAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGTIEAVRQALQVLPQDNVTLKFLLEATGDVNTSDVDLAIASKAIILGFNVKLPGSVKSYAENKAVEIRLYRVIYELIDDVRNAMEGLLEPVEEQVSIGSAQVRATFSSGSGRVAGCMVKEGKVVKGCGIRVIRKGKVIHVGILDSLRRVKEVVNEVNAGLECGLGLEDYDDWEEGDILEAFNTFEKKRTLEEASVSMAAAVEGVGVKL | 1013 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi3154g00005 | 1013 | FunFam | Translation initiation factor IF-2 | 481 | 659 | - | - | |
Gabi3154g00005 | 1013 | MobiDBLite | consensus disorder prediction | 74 | 91 | - | - | |
Gabi3154g00005 | 1013 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 791 | 903 | IPR036925 | - | |
Gabi3154g00005 | 1013 | NCBIfam | small GTP-binding protein domain | 486 | 647 | IPR005225 | GO:0005525 | |
Gabi3154g00005 | 1013 | MobiDBLite | consensus disorder prediction | 248 | 268 | - | - | |
Gabi3154g00005 | 1013 | CDD | mtIF2_IVc | 903 | 985 | - | - | |
Gabi3154g00005 | 1013 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 484 | 657 | IPR000795 | GO:0003924|GO:0005525 | |
Gabi3154g00005 | 1013 | Gene3D | Translation factors | 660 | 774 | - | - | |
Gabi3154g00005 | 1013 | MobiDBLite | consensus disorder prediction | 151 | 203 | - | - | |
Gabi3154g00005 | 1013 | ProSitePatterns | Initiation factor 2 signature. | 946 | 968 | IPR000178 | GO:0003743|GO:0003924|GO:0005525|GO:0006413 | |
Gabi3154g00005 | 1013 | NCBIfam | translation initiation factor IF-2 | 405 | 995 | IPR000178 | GO:0003743|GO:0003924|GO:0005525|GO:0006413 | |
Gabi3154g00005 | 1013 | MobiDBLite | consensus disorder prediction | 227 | 247 | - | - | |
Gabi3154g00005 | 1013 | SUPERFAMILY | Translation proteins | 899 | 993 | IPR009000 | - | |
Gabi3154g00005 | 1013 | FunFam | Translation initiation factor IF-2 | 660 | 778 | - | - | |
Gabi3154g00005 | 1013 | Pfam | Translation-initiation factor 2 | 792 | 885 | IPR023115 | - | |
Gabi3154g00005 | 1013 | MobiDBLite | consensus disorder prediction | 74 | 139 | - | - | |
Gabi3154g00005 | 1013 | MobiDBLite | consensus disorder prediction | 271 | 292 | - | - | |
Gabi3154g00005 | 1013 | Hamap | Translation initiation factor IF-2 [infB]. | 7 | 993 | IPR000178 | GO:0003743|GO:0003924|GO:0005525|GO:0006413 | |
Gabi3154g00005 | 1013 | Gene3D | Translation factors | 898 | 994 | - | - | |
Gabi3154g00005 | 1013 | CDD | IF2_mtIF2_II | 664 | 758 | IPR044145 | - | |
Gabi3154g00005 | 1013 | MobiDBLite | consensus disorder prediction | 315 | 356 | - | - | |
Gabi3154g00005 | 1013 | PRINTS | GTP-binding elongation factor signature | 488 | 501 | IPR000795 | GO:0003924|GO:0005525 | |
Gabi3154g00005 | 1013 | PRINTS | GTP-binding elongation factor signature | 592 | 601 | IPR000795 | GO:0003924|GO:0005525 | |
Gabi3154g00005 | 1013 | PRINTS | GTP-binding elongation factor signature | 556 | 567 | IPR000795 | GO:0003924|GO:0005525 | |
Gabi3154g00005 | 1013 | PRINTS | GTP-binding elongation factor signature | 540 | 550 | IPR000795 | GO:0003924|GO:0005525 | |
Gabi3154g00005 | 1013 | MobiDBLite | consensus disorder prediction | 324 | 338 | - | - | |
Gabi3154g00005 | 1013 | Pfam | Translation initiation factor IF-2, N-terminal region | 407 | 455 | IPR006847 | - | |
Gabi3154g00005 | 1013 | CDD | IF2_eIF5B | 487 | 653 | - | - | |
Gabi3154g00005 | 1013 | Gene3D | - | 792 | 897 | IPR036925 | - | |
Gabi3154g00005 | 1013 | FunFam | Translation initiation factor IF-2 | 792 | 897 | - | - | |
Gabi3154g00005 | 1013 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 478 | 657 | IPR027417 | - | |
Gabi3154g00005 | 1013 | MobiDBLite | consensus disorder prediction | 215 | 292 | - | - | |
Gabi3154g00005 | 1013 | Gene3D | - | 481 | 659 | IPR027417 | - | |
Gabi3154g00005 | 1013 | Coils | Coil | 743 | 763 | - | - | |
Gabi3154g00005 | 1013 | Pfam | Elongation factor Tu GTP binding domain | 489 | 648 | IPR000795 | GO:0003924|GO:0005525 | |
Gabi3154g00005 | 1013 | SUPERFAMILY | Translation proteins | 660 | 744 | IPR009000 | - | |
Gabi3154g00005 | 1013 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 161 | 998 | IPR015760 | - | |
Gabi3154g00005 | 1013 | FunFam | Translation initiation factor IF-2 | 897 | 994 | - | - | |
Gabi3154g00005 | 1013 | MobiDBLite | consensus disorder prediction | 170 | 188 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi3154g00005 | Gabi-Chr3154 | 38422 | 47284 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi3154g00005 | 466 | 883 | Eukaryotic Initiation Factors Gene Family | AT1G76810 | 29.735 | 5.82e-28 | 120 |