Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3154g00005 ATGCTTATATTAGTGGGAAACGTGCAAGGAACAATGAGTTCTCTTGCTTCACCAGTGAGTTTAGGGAGCCTCATGGGTGTGAGTTCTTGTGGAAGGTCCCATTCTGGTGTGAGGAGAGTCTCTCTTTCTAGAGGGAAATGTAAGGGTAACAAGACATGGCATTGTGTCTCTTTGTCTGTATGTAGATATTCAGTGACCACAACTGATTTTGTTGCTGACCAAGGCAATTCAGTGTCCCTTGATTCTAACAGTAATAGTAAAAGTGGAGGAGATGATAGTGCTGGTTTTGTCCTTAAGCCTCCTCCTAGGCCTGTGTTGAAGTCCCCAGGCAATAAGGTTGACCCCATTTTAGGTTCGAATTCGGAATCTTGGGCCCCCTCTAGGGATACTAAGGAACCTCCTGAGGATGTAGAGGAGAGGAATAAAGTGATTGAGTCGCTTGGAGAGGTGTTGGAGAAGGCTGAAAAGCTGGAAAATCCTAAGTTGGATGGTGAAAGAAATAATGGGTCAGTAAATAAACCAGTAAGATCCAATACAAATGCTAATCCTAAGGCTGATAAACCAGTAGATTCAACAAAAACCCAGAAGGCTAAAACATTGAAGAGTGTATGGCGTAAAGGGGACACGGTCGCAGCTGTGCAGAAGGTTGTGAAGGAAGTACCCAAGCCTAGTATCAAGAATGAAGGGGAGAAATCTCAAACAGGGGGAGGGGTGAAGGTAACATCACAATCTCGTGCTCCTCAGCCACCTTCAAAACCTTCACCAATGTTACAAGCTAAACCATCTATAGCTCCCCCACCCGTTAAAAAACCTGTTGTCTTGAGGGATAAGGATGCAGCTGAAACATCTGTTAAATCTAAAGAAAGGAAGGGCCCCATCTTGATTGATAAGTTTGCTTCCAAGAAACCAGTAGTTGATCCTGTAATTGCTCAAGCAGTTTTAGCCCCTTCAAAACCGGGGAAGGCCCCTCCCCCGGGAAAGTTTAAAGATGATTACCGGAAGAAAGGTGGTCCGGCTGGGGGAGGACCCAGAAGACGAATAGTAGATGATGGGATACCTGATGAGGACACATCAGAACTGAATGTTTCTATTCCTGGTGCTGCAACAGCAAGAAAAGGAAGGAAGTGGAGTAAAGCAAGTCGAAAGGCAGCAAGACTTCAGGCTGCCAAGGATGCAGCTCCTGTCAAAGTAGAAATTCTAGAGGTCAGTGACAAGGGTATGCTAGTGGAGGAGTTAGCCTACAATTTGGCAATCAGTGAAGGTGAAATCCTGGGTTTGCTATACGCCAAGGGGATTAAACCGGATGGTGTACAAACTTTAGACAATGATATGGTGAAGATGGTATGTAAAGAGTATAACGTGGAAGTCATGGATGTTGATCCTGTTGAAGTCGAAGGATTAGTGAAGAAAAGGGAAATTCTTGATGAAGATGACCTTGACAAACTCAAAGATAGGCCTCCTGTCGTTACTATCATGGGCCATGTAGATCATGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCTGCTTCTGAAGCTGGTGGTATCACACAGGGAATTGGGGCTTATAAAGTGCAAGTACCTGTTGATGGCAAACTGCTGCCCTGTGTTTTCCTTGACACTCCTGGACACGAGGCATTTGGGGCGATGAGAGCTCGTGGAGCAAGCGTAACAGACATTGCTATTATTGTTGTGGCTGCTGATGATGGTATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCGGCAGGGGTACCCATAATCGTTGCTATAAACAAGATAGATAAAGATGGAGCAAATCCAGAACGAGTTATGCAAGATCTTTCTTCAATTGGTTTAATGCCAGAAGACTGGGGTGGTGATGTCCCAATGGTTCAGATAAGTGCTCTTAAAGGGGAGAATGTGGATGATCTTTTGGAAACTATTATGCTTGTTGGCGAGTTGCAAGAGCTGAAAGCTAATCCTGATAGAAGTGCAAAGGGCACAGTCATTGAGGCAGGGCTAGATAAATCGAAAGGACCATTTGCTACATTTATTGTGCAGAATGGCACCCTTAGAAGGGGAGATATAGTAGTTTGTGGAGAAGCTTTTGGAAAGGTGCGGGCTTTATTCGATGATGGTGGAAAGCGTGTTGATGTAGCTACCCCCTCTATACCTGTACAGATTATTGGATTGAATAATGTTCCAATTGCTGGTGATGAATTTGAGGTTGTTGAGTCCCTTGATACTGCACGTGAAAAGGCAGAGTCCCGTGCTGAGTTATTGCGAAATGAACGTATTTTAGCAAAGGCAGGGGATGGCAAGGTCACCCTTTCTTCCTTAGCTTCTGCAGTTTCATCAGGAAAGCTTTCTGGACTAGACTTGCACCAACTAAATATTATCTTGAAGGTTGATCTTCAGGGAACTATTGAAGCTGTCAGACAAGCCTTGCAGGTGCTACCACAGGATAATGTCACACTTAAATTTTTGTTGGAAGCAACAGGCGATGTAAACACAAGTGATGTTGACCTTGCCATTGCGAGCAAAGCTATTATTTTGGGATTTAATGTCAAATTACCAGGCTCTGTGAAAAGCTATGCAGAGAATAAAGCCGTTGAGATTAGATTATATAGAGTAATTTATGAATTAATTGATGATGTGCGGAACGCAATGGAAGGTCTCCTGGAACCTGTTGAGGAACAAGTATCAATTGGCTCAGCACAAGTACGGGCCACATTCAGCAGCGGTAGTGGTCGTGTTGCTGGATGCATGGTTAAAGAGGGAAAGGTAGTAAAAGGCTGCGGTATTCGAGTCATTCGGAAGGGAAAAGTAATTCATGTTGGTATTCTTGATTCTTTGAGACGAGTGAAGGAGGTTGTCAATGAGGTAAATGCTGGTCTTGAGTGTGGACTTGGGTTAGAAGACTATGATGATTGGGAAGAGGGTGATATTCTTGAAGCCTTCAACACATTTGAGAAGAAGAGGACCCTTGAAGAGGCCTCAGTATCAATGGCAGCTGCAGTGGAGGGAGTAGGAGTTAAATTGTAG 3042 0.4415 MLILVGNVQGTMSSLASPVSLGSLMGVSSCGRSHSGVRRVSLSRGKCKGNKTWHCVSLSVCRYSVTTTDFVADQGNSVSLDSNSNSKSGGDDSAGFVLKPPPRPVLKSPGNKVDPILGSNSESWAPSRDTKEPPEDVEERNKVIESLGEVLEKAEKLENPKLDGERNNGSVNKPVRSNTNANPKADKPVDSTKTQKAKTLKSVWRKGDTVAAVQKVVKEVPKPSIKNEGEKSQTGGGVKVTSQSRAPQPPSKPSPMLQAKPSIAPPPVKKPVVLRDKDAAETSVKSKERKGPILIDKFASKKPVVDPVIAQAVLAPSKPGKAPPPGKFKDDYRKKGGPAGGGPRRRIVDDGIPDEDTSELNVSIPGAATARKGRKWSKASRKAARLQAAKDAAPVKVEILEVSDKGMLVEELAYNLAISEGEILGLLYAKGIKPDGVQTLDNDMVKMVCKEYNVEVMDVDPVEVEGLVKKREILDEDDLDKLKDRPPVVTIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVQVPVDGKLLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIVAINKIDKDGANPERVMQDLSSIGLMPEDWGGDVPMVQISALKGENVDDLLETIMLVGELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLRRGDIVVCGEAFGKVRALFDDGGKRVDVATPSIPVQIIGLNNVPIAGDEFEVVESLDTAREKAESRAELLRNERILAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGTIEAVRQALQVLPQDNVTLKFLLEATGDVNTSDVDLAIASKAIILGFNVKLPGSVKSYAENKAVEIRLYRVIYELIDDVRNAMEGLLEPVEEQVSIGSAQVRATFSSGSGRVAGCMVKEGKVVKGCGIRVIRKGKVIHVGILDSLRRVKEVVNEVNAGLECGLGLEDYDDWEEGDILEAFNTFEKKRTLEEASVSMAAAVEGVGVKL 1013
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi3154g00005 1013 FunFam Translation initiation factor IF-2 481 659 - -
Gabi3154g00005 1013 MobiDBLite consensus disorder prediction 74 91 - -
Gabi3154g00005 1013 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 791 903 IPR036925 -
Gabi3154g00005 1013 NCBIfam small GTP-binding protein domain 486 647 IPR005225 GO:0005525
Gabi3154g00005 1013 MobiDBLite consensus disorder prediction 248 268 - -
Gabi3154g00005 1013 CDD mtIF2_IVc 903 985 - -
Gabi3154g00005 1013 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 484 657 IPR000795 GO:0003924|GO:0005525
Gabi3154g00005 1013 Gene3D Translation factors 660 774 - -
Gabi3154g00005 1013 MobiDBLite consensus disorder prediction 151 203 - -
Gabi3154g00005 1013 ProSitePatterns Initiation factor 2 signature. 946 968 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Gabi3154g00005 1013 NCBIfam translation initiation factor IF-2 405 995 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Gabi3154g00005 1013 MobiDBLite consensus disorder prediction 227 247 - -
Gabi3154g00005 1013 SUPERFAMILY Translation proteins 899 993 IPR009000 -
Gabi3154g00005 1013 FunFam Translation initiation factor IF-2 660 778 - -
Gabi3154g00005 1013 Pfam Translation-initiation factor 2 792 885 IPR023115 -
Gabi3154g00005 1013 MobiDBLite consensus disorder prediction 74 139 - -
Gabi3154g00005 1013 MobiDBLite consensus disorder prediction 271 292 - -
Gabi3154g00005 1013 Hamap Translation initiation factor IF-2 [infB]. 7 993 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Gabi3154g00005 1013 Gene3D Translation factors 898 994 - -
Gabi3154g00005 1013 CDD IF2_mtIF2_II 664 758 IPR044145 -
Gabi3154g00005 1013 MobiDBLite consensus disorder prediction 315 356 - -
Gabi3154g00005 1013 PRINTS GTP-binding elongation factor signature 488 501 IPR000795 GO:0003924|GO:0005525
Gabi3154g00005 1013 PRINTS GTP-binding elongation factor signature 592 601 IPR000795 GO:0003924|GO:0005525
Gabi3154g00005 1013 PRINTS GTP-binding elongation factor signature 556 567 IPR000795 GO:0003924|GO:0005525
Gabi3154g00005 1013 PRINTS GTP-binding elongation factor signature 540 550 IPR000795 GO:0003924|GO:0005525
Gabi3154g00005 1013 MobiDBLite consensus disorder prediction 324 338 - -
Gabi3154g00005 1013 Pfam Translation initiation factor IF-2, N-terminal region 407 455 IPR006847 -
Gabi3154g00005 1013 CDD IF2_eIF5B 487 653 - -
Gabi3154g00005 1013 Gene3D - 792 897 IPR036925 -
Gabi3154g00005 1013 FunFam Translation initiation factor IF-2 792 897 - -
Gabi3154g00005 1013 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 657 IPR027417 -
Gabi3154g00005 1013 MobiDBLite consensus disorder prediction 215 292 - -
Gabi3154g00005 1013 Gene3D - 481 659 IPR027417 -
Gabi3154g00005 1013 Coils Coil 743 763 - -
Gabi3154g00005 1013 Pfam Elongation factor Tu GTP binding domain 489 648 IPR000795 GO:0003924|GO:0005525
Gabi3154g00005 1013 SUPERFAMILY Translation proteins 660 744 IPR009000 -
Gabi3154g00005 1013 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 161 998 IPR015760 -
Gabi3154g00005 1013 FunFam Translation initiation factor IF-2 897 994 - -
Gabi3154g00005 1013 MobiDBLite consensus disorder prediction 170 188 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi3154g00005 Gabi-Chr3154 38422 47284 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3154g00005 466 883 Eukaryotic Initiation Factors Gene Family AT1G76810 29.735 5.82e-28 120