Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3154g00004 ATGCTTATATTAGTGGGAAACGTGCAAGGAACAATGAGTTCTCTTGCTTCACCAGTGAGTTTAGGGAGCCTCATGGGTGTGAGTTCTTGTGGAAGGTCCCATTCTGGTGTGAGGAGAGTCTCTCTTTCTAGAGGGAAATGTAAGGGTAACAAGACATGGCATTGTGTCTCTTTGTCTGTATGTAGATATTCAGTGACCACAACTGATTTTGTTGCTGACCAAGGCAATTCAGTGTCCCTTGATTCTAACAGTAATAGTAAAAGTGGAGGAGATGATAGTGCTGGTTTTGTCCTTAAGCCTCCTCCTAGGCCTGTGTTGAAGTCCCCAGGCAATAAGGTTGACCCCATTTTAGGTTCGAATTCGGAATCTTGGGCCCCCTCTAGGGATACTAAGGAACCTCCTGAGGATGTAGAGGAGAGGAATAAAGTGATTGAGTCGCTTGGAGAGGTGTTGGAGAAGGCTGAAAAGCTGGAAAATCCTAAGTTGGATGGTGAAAGAAATAATGGGTCAGTAAATAAACCAGTAAGATCCAATACAAATGCTAATCCTAAGGCTGATAAACCAGTAGATTCAACAAAAACCCAGAAGGCTAAAACATTGAAGAGTGTATGGCGTAAAGGGGACACGGTCGCAGCTGTGCAGAAGGTTGTGAAGGAAGTACCCAAGCCTAGTATCAAGAATGAAGGGGAGAAATCTCAAACAGGGGGAGGGGTGAAGGTAACATCACAATCTCGTGCTCCTCAGCCACCTTCAAAACCTTCACCAATGTTACAAGCTAAACCATCTATAGCTCCCCCACCCGTTAAAAAACCTGTTGTCTTGAGGGATAAGGATGCAGCTGAAACATCTGTTAAATCTAAAGAAAGGAAGGGCCCCATCTTGATTGATAAGTTTGCTTCCAAGAAACCAGTAGTTGATCCTGTAATTGCTCAAGCAGTTTTAGCCCCTTCAAAACCGGGGAAGGCCCCTCCCCCGGGAAAGTTTAAAGATGATTACCGGAAGAAAGGTGGTCCGGCTGGGGGAGGACCCAGAAGACGAATAGTAGATGATGGGATACCTGATGAGGACACATCAGAACTGAATGTTTCTATTCCTGGTGCTGCAACAGCAAGAAAAGGAAGGAAGTGGAGTAAAGCAAGTCGAAAGGCAGCAAGACTTCAGGCTGCCAAGGATGCAGCTCCTGTCAAAGTAGAAATTCTAGAGGTCAGTGACAAGGGTATGCTAGTGGAGGAGTTAGCCTACAATTTGGCAATCAGTGAAGGTGAAATCCTGGGTTTGCTATACGCCAAGGGGATTAAACCGGATGGTGTACAAACTTTAGACAATGATATGGTGAAGATGGTATGTAAAGAGTATAACGTGGAAGTCATGGATGTTGATCCTGTTGAAGTCGAAGGATTAGTGAAGAAAAGGGAAATTCTTGATGAAGATGACCTTGACAAACTCAAAGATAGGCCTCCTGTCGTTACTATCATGGGCCATGTAGATCATGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCTGCTTCTGAAGCTGGTGGTATCACACAGGGAATTGGGGCTTATAAAGTGCAAGTACCTGTTGATGGCAAACTGCTGCCCTGTGTTTTCCTTGACACTCCTGGACACGAGGCATTTGGGGCGATGAGAGCTCGTGGAGCAAGCGTAACAGACATTGCTATTATTGTTGTGGCTGCTGATGATGGTATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCGGCAGGGGTACCCATAATCGTTGCTATAAACAAGGCATGCCATCCTGATGTGTCTCCAACATCTACAATTCCTATGCTTTACTTGGTGATGGCTAGAGGAATTGTTGACACATTATTATTTATTTATTTGAAACAGATAGATAAAGATGGAGCAAATCCAGAACGAGTTATGCAAGATCTTTCTTCAATTGGTTTAATGCCAGAAGACTGGGGTGGTGATGTCCCAATGGTTCAGATAAGTGCTCTTAAAGGGGAGAATGTGGATGATCTTTTGGAAACTATTATGCTTGTTGGCGAGTTGCAAGAGCTGAAAGCTAATCCTGATAGAAGTGCAAAGGGCACAGTCATTGAGGCAGGGCTAGATAAATCGAAAGGACCATTTGCTACATTTATTGTGCAGAATGGCACCCTTAGAAGGGGAGATATAGTAGTTTGTGGAGAAGCTTTTGGAAAGGTGCGGGCTTTATTCGATGATGGTGGAAAGCGTGTTGATGTAGCTACCCCCTCTATACCTGTACAGATTATTGGATTGAATAATGTTCCAATTGCTGGTGATGAATTTGAGGTTGTTGAGTCCCTTGATACTGCACGTGAAAAGGCAGAGTCCCGTGCTGAGTTATTGCGAAATGAACGTATTTTAGCAAAGGCAGGGGATGGCAAGGTCACCCTTTCTTCCTTAGCTTCTGCAGTTTCATCAGGAAAGCTTTCTGGACTAGACTTGCACCAACTAAATATTATCTTGAAGGTTGATCTTCAGGGAACTATTGAAGCTGTCAGACAAGCCTTGCAGGTGCTACCACAGGATAATGTCACACTTAAATTTTTGTTGGAAGCAACAGGCGATGTAAACACAAGTGATGTTGACCTTGCCATTGCGAGCAAAGCTATTATTTTGGGATTTAATGTCAAATTACCAGGCTCTGTGAAAAGCTATGCAGAGAATAAAGCCGTTGAGATTAGATTATATAGAGTAATTTATGAATTAATTGATGATGTGCGGAACGCAATGGAAGGTCTCCTGGAACCTGTTGAGGAACAAGTATCAATTGGCTCAGCACAAGTACGGGCCACATTCAGCAGCGGTAGTGGTCGTGTTGCTGGATGCATGGTTAAAGAGGGAAAGGTAGTAAAAGGCTGCGGTATTCGAGTCATTCGGAAGGGAAAAGTAATTCATGTTGGTATTCTTGATTCTTTGAGACGAGTGAAGGAGGTTGTCAATGAGGTAAATGCTGGTCTTGAGTGTGGACTTGGGTTAGAAGACTATGATGATTGGGAAGAGGGTGATATTCTTGAAGCCTTCAACACATTTGAGAAGAAGAGGACCCTTGAAGAGGCCTCAGTATCAATGGCAGCTGCAGTGGAGGGAGTAGGAGTTAAATTGTAG 3144 0.4389 MLILVGNVQGTMSSLASPVSLGSLMGVSSCGRSHSGVRRVSLSRGKCKGNKTWHCVSLSVCRYSVTTTDFVADQGNSVSLDSNSNSKSGGDDSAGFVLKPPPRPVLKSPGNKVDPILGSNSESWAPSRDTKEPPEDVEERNKVIESLGEVLEKAEKLENPKLDGERNNGSVNKPVRSNTNANPKADKPVDSTKTQKAKTLKSVWRKGDTVAAVQKVVKEVPKPSIKNEGEKSQTGGGVKVTSQSRAPQPPSKPSPMLQAKPSIAPPPVKKPVVLRDKDAAETSVKSKERKGPILIDKFASKKPVVDPVIAQAVLAPSKPGKAPPPGKFKDDYRKKGGPAGGGPRRRIVDDGIPDEDTSELNVSIPGAATARKGRKWSKASRKAARLQAAKDAAPVKVEILEVSDKGMLVEELAYNLAISEGEILGLLYAKGIKPDGVQTLDNDMVKMVCKEYNVEVMDVDPVEVEGLVKKREILDEDDLDKLKDRPPVVTIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVQVPVDGKLLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIVAINKACHPDVSPTSTIPMLYLVMARGIVDTLLFIYLKQIDKDGANPERVMQDLSSIGLMPEDWGGDVPMVQISALKGENVDDLLETIMLVGELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLRRGDIVVCGEAFGKVRALFDDGGKRVDVATPSIPVQIIGLNNVPIAGDEFEVVESLDTAREKAESRAELLRNERILAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGTIEAVRQALQVLPQDNVTLKFLLEATGDVNTSDVDLAIASKAIILGFNVKLPGSVKSYAENKAVEIRLYRVIYELIDDVRNAMEGLLEPVEEQVSIGSAQVRATFSSGSGRVAGCMVKEGKVVKGCGIRVIRKGKVIHVGILDSLRRVKEVVNEVNAGLECGLGLEDYDDWEEGDILEAFNTFEKKRTLEEASVSMAAAVEGVGVKL 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3154g00004 1047 FunFam Translation initiation factor IF-2 826 931 - -
Gabi3154g00004 1047 MobiDBLite consensus disorder prediction 74 91 - -
Gabi3154g00004 1047 SUPERFAMILY Translation proteins 933 1027 IPR009000 -
Gabi3154g00004 1047 MobiDBLite consensus disorder prediction 248 268 - -
Gabi3154g00004 1047 Coils Coil 777 797 - -
Gabi3154g00004 1047 Gene3D - 483 608 IPR027417 -
Gabi3154g00004 1047 MobiDBLite consensus disorder prediction 151 203 - -
Gabi3154g00004 1047 Pfam Elongation factor Tu GTP binding domain 489 682 IPR000795 GO:0003924|GO:0005525
Gabi3154g00004 1047 ProSitePatterns Initiation factor 2 signature. 980 1002 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Gabi3154g00004 1047 MobiDBLite consensus disorder prediction 227 247 - -
Gabi3154g00004 1047 CDD mtIF2_IVc 937 1019 - -
Gabi3154g00004 1047 MobiDBLite consensus disorder prediction 74 139 - -
Gabi3154g00004 1047 Pfam Translation-initiation factor 2 826 919 IPR023115 -
Gabi3154g00004 1047 Gene3D Translation factors 932 1028 - -
Gabi3154g00004 1047 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 825 937 IPR036925 -
Gabi3154g00004 1047 MobiDBLite consensus disorder prediction 271 292 - -
Gabi3154g00004 1047 Gene3D - 826 931 IPR036925 -
Gabi3154g00004 1047 FunFam Translation initiation factor IF-2 694 812 - -
Gabi3154g00004 1047 MobiDBLite consensus disorder prediction 315 356 - -
Gabi3154g00004 1047 Gene3D - 609 693 IPR027417 -
Gabi3154g00004 1047 NCBIfam translation initiation factor IF-2 626 1029 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Gabi3154g00004 1047 PRINTS GTP-binding elongation factor signature 556 567 IPR000795 GO:0003924|GO:0005525
Gabi3154g00004 1047 PRINTS GTP-binding elongation factor signature 488 501 IPR000795 GO:0003924|GO:0005525
Gabi3154g00004 1047 PRINTS GTP-binding elongation factor signature 540 550 IPR000795 GO:0003924|GO:0005525
Gabi3154g00004 1047 PRINTS GTP-binding elongation factor signature 592 601 IPR000795 GO:0003924|GO:0005525
Gabi3154g00004 1047 Gene3D Translation factors 694 808 - -
Gabi3154g00004 1047 Hamap Translation initiation factor IF-2 [infB]. 7 1027 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Gabi3154g00004 1047 MobiDBLite consensus disorder prediction 324 338 - -
Gabi3154g00004 1047 Pfam Translation initiation factor IF-2, N-terminal region 407 455 IPR006847 -
Gabi3154g00004 1047 CDD IF2_eIF5B 487 687 - -
Gabi3154g00004 1047 CDD IF2_mtIF2_II 698 792 IPR044145 -
Gabi3154g00004 1047 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 484 691 IPR000795 GO:0003924|GO:0005525
Gabi3154g00004 1047 MobiDBLite consensus disorder prediction 215 292 - -
Gabi3154g00004 1047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 691 IPR027417 -
Gabi3154g00004 1047 FunFam Translation initiation factor IF-2 481 618 - -
Gabi3154g00004 1047 SUPERFAMILY Translation proteins 694 778 IPR009000 -
Gabi3154g00004 1047 NCBIfam small GTP-binding protein domain 486 599 IPR005225 GO:0005525
Gabi3154g00004 1047 FunFam Translation initiation factor IF-2 931 1028 - -
Gabi3154g00004 1047 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 161 1032 IPR015760 -
Gabi3154g00004 1047 MobiDBLite consensus disorder prediction 170 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3154g00004 Gabi-Chr3154 38421 47285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3154g00004 466 917 Eukaryotic Initiation Factors Gene Family AT1G76810 29.563 1.03e-27 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3154g00004 K02519 - gmx:100818840 1589.32