Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3152g00003 ATGGATCCTTTTTCTCTCGTATTACCTACAATTTGGTCTATATGCCTTCACCTACTTCTTCTCTTTACTTTGAACTCACTATGGTTTACCACAAACACAAGTGCCTCTGCATCTGCAGGAAATGAGAGTGATCACATGGCATTGCTCAAATTCAAGGAATCAATATCCAGTGACCCACGTGGAATCTTAGGTTCTTGGAATAGTTCTGCCCACTTTTGCAACTGGTATGGAATCACATGCAGCCCCATGCATCAAAGAGTTACAGAGTTGAACCTACAAGGATATCACTTACATGGGTTCATATCTCCACAAGTTGGCAATCTCTCTTTTCTTATAAACCTCAACCTCAAGAACAACAGCTTCTATGGAAAAATTCCACAAGAATTGGGTCGGTTGTTACAACTGCAACAACTCTATCTCAGCAATAACTCATTGGTTGGGGAAATACCTACAAACTTGACAAGTTGCTCTAATCTTCAAGGCTTACACTTGTCAGGGAACAATCTGATTGGCAACATACCAATTGAAATTGGCTCTCTTGGGAAGCTCCAACAAGTATTCATTACTCAAAACAATTTAACAGGACAAATCCCACCATCCATAGGGAATCTTTCATCCCTTACTGATCTTAATGTGTTTTCTAATAGCTTGGAGGGAAATATTCCACAAGAAATATGCAGCTTGAAAAACTTAGCAACAATATCAGTGGGGATCAATAAACTATCTGGTAAACTTCTTTCTTGTCTTTACAATATGTCATCTCTCACTTTATTCTCTGTTGATACGAACCAATTTAATGGTTCTCTTCCACCAGAAATGTTCCTCACACTCCCTAATCTCCAAACATTTTTCATTGGTGGGAATCAAATCACAGGGAAAATCCCAACTTCCATCACAAATGCAACTACCCTTCAAGCATTTGATATCACTGAAAACTATATGGTAGGACAAGTTCCAAGTCTAGGGAAGCTAAGAGATATTCGGCTCCTAGATCTGTCTCATAACAATCTAGGAGGAAACTCAACAGAAGATTTGGAGTTTTTAAAATCATTGACAAATTGTAGTAAGTTGAATGTGGTTGATATATCCACCAATAATTTTGGAGGTCATTTACCAGATTCCTTGGGAAATTTTTCCACCCAACTCAATTACCTATATCTTGGGAGCAATCATATATCAGGACAAATTCCGGTGACATTAGGAAATCTAATTAGCTTAATACTTTTGACCATGGAAAATAACAGAGTTGAAGGGGTGATTCCAACTACTTTTGGGAAGTTTCAAAATTTGCAAGTGTTAGAATTGATTGGGAACAAGCTGTCAGGAGATATACCAGCCTTCATAGGCAACCTAAGTCAGTTGTATCATTTGGGTTTAGGACAGAATACGTTAGAAGGAAATATTCCTCCAAGCATAGGAAACTGCCAAAAGTTAGAATACTTAGACCTTTCTCAAAACAACCTTAGAGGAACCATACCCTCAGAGGTATTTAGTCTTTTCTCTTTAACAAACTTATTGGACCTATCACAAAACTCATTGAGTGGTAATATACCAGAAGAAGTGGGAAGGCTAACAAATATTGATATGTTGAATGTCTCTGAGAACCATTTGTCTGGGAATATTCCTGGAGCCATTGGAGAATGCATAAGCTTGGAGTACCTTTATTTGCAAGGGAATTCCTTCGATGGAATCATACCATCCTCTTTGTCTTCATTAAAAGGTCTTCAACGTTTAGACTTATCACGAAACAGCTTGTCTGGATCAATTCCTAAAGATCTGCAAAATATTTCTTTCTTGGAGTACCTGAATGTGTCTTTTAACATGTTGGATGGCGAGGTACCAACTGGAGGTGTCTTTCGAAATGCAAGTGCGTTAGCAGTCACTGGAAATGATAAGCTTTGTGGAGGTATTTCTGAGCTGCATCTACTACCATGCCTTGTCAAAGGTGAGAAACATGCAAATCACCATAATTTCATATTGATAGCTGTGATAGTTAGTGTGGTTGCTTTTCTTCTCATACTTCTATTTATTCTTACTACCTACTGGTCGAGGAAAAGAAACGAGGAATCACCTTCTTATTCATCAACAAATGACCAATTGGTGAAGGTTTCATACGAAAACCTACACTATGGAACCGATGGGTTCTCAACTAGAAACTTGATTGGATCAGGAAGTTTTGGTTCTGTGTACAAAGGAACTCTTGCATCAGAAGATAAATTTGTTGCCATAAAGGTCCTAAATCTTCAAAAGAAGGGAGCTCACAAGAGTTTTATTGCTGAATGTAATGCACTCAAAAATATTAGACATCGAAATCTTGTTAGGATTTTAACATGTTGTTCGAGTGCTGATTACAATGGTCAAGAATTTAAAGCTCTAGTTTTTGAGTACATGGAAAATGGAAGCTTAGAACAATGGCTGCATCCAAGTACAGTAAATGTGAAGCCTCCAAGAACATTGGACCTTGGTCAAAGATTACATATCATTATTGATGTTGCTTTTGCTTTACACTATCTTCATCATGAGTGTGAGAAACCTATCATTCATTGTGATTTAAAGCCAAGCAATATCCTTCTTGATGATGACATGATTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAACCATTAGTGGCACCTCTCTTAAGCAAACTAGCACAACTGGGCTAATTGGGACTATTGGCTATGCTCCTCCAGAGTATGGAATGGGTTCTGAAGTGTCTACATATGGTGACATCTATAGCTTTGGGGTTCTTATGTTGGAAATGCTTACTGGAAGAAGGCCCACAGATGAAATATTTGAGGGTGGTCAAAATCTTCATAACTTTGTTGAAATTTCATTTCCTGAGAATCTGTTACAGATTTTGGACCCATCTCTTGTATCAGTGGATAATGAAGCAGCAATAGAAGAAGAAAAAAATGGGAATCTAAATAAAAATGTTGAAAAGTGCTTAATTTCACTTTTTAGGATTGGACTAGCTTGTTCAATGGAATCACCGAAAACAAGAATGAGTATGGTTGATGTCACTAGGGAGCTTGATCTAATCAAAAGTTTCTTTCCTTCTGGTGGGATTGATGGTGGCTAA 3090 0.3783 MDPFSLVLPTIWSICLHLLLLFTLNSLWFTTNTSASASAGNESDHMALLKFKESISSDPRGILGSWNSSAHFCNWYGITCSPMHQRVTELNLQGYHLHGFISPQVGNLSFLINLNLKNNSFYGKIPQELGRLLQLQQLYLSNNSLVGEIPTNLTSCSNLQGLHLSGNNLIGNIPIEIGSLGKLQQVFITQNNLTGQIPPSIGNLSSLTDLNVFSNSLEGNIPQEICSLKNLATISVGINKLSGKLLSCLYNMSSLTLFSVDTNQFNGSLPPEMFLTLPNLQTFFIGGNQITGKIPTSITNATTLQAFDITENYMVGQVPSLGKLRDIRLLDLSHNNLGGNSTEDLEFLKSLTNCSKLNVVDISTNNFGGHLPDSLGNFSTQLNYLYLGSNHISGQIPVTLGNLISLILLTMENNRVEGVIPTTFGKFQNLQVLELIGNKLSGDIPAFIGNLSQLYHLGLGQNTLEGNIPPSIGNCQKLEYLDLSQNNLRGTIPSEVFSLFSLTNLLDLSQNSLSGNIPEEVGRLTNIDMLNVSENHLSGNIPGAIGECISLEYLYLQGNSFDGIIPSSLSSLKGLQRLDLSRNSLSGSIPKDLQNISFLEYLNVSFNMLDGEVPTGGVFRNASALAVTGNDKLCGGISELHLLPCLVKGEKHANHHNFILIAVIVSVVAFLLILLFILTTYWSRKRNEESPSYSSTNDQLVKVSYENLHYGTDGFSTRNLIGSGSFGSVYKGTLASEDKFVAIKVLNLQKKGAHKSFIAECNALKNIRHRNLVRILTCCSSADYNGQEFKALVFEYMENGSLEQWLHPSTVNVKPPRTLDLGQRLHIIIDVAFALHYLHHECEKPIIHCDLKPSNILLDDDMIAHVSDFGIARLVSTISGTSLKQTSTTGLIGTIGYAPPEYGMGSEVSTYGDIYSFGVLMLEMLTGRRPTDEIFEGGQNLHNFVEISFPENLLQILDPSLVSVDNEAAIEEEKNGNLNKNVEKCLISLFRIGLACSMESPKTRMSMVDVTRELDLIKSFFPSGGIDGG 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3152g00003 1029 ProSiteProfiles Leucine-rich repeat profile. 477 499 IPR001611 GO:0005515
Gabi3152g00003 1029 FunFam LRR receptor-like serine/threonine-protein kinase EFR 347 651 - -
Gabi3152g00003 1029 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 797 1024 - -
Gabi3152g00003 1029 ProSitePatterns Protein kinases ATP-binding region signature. 721 744 IPR017441 GO:0005524
Gabi3152g00003 1029 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 81 346 - -
Gabi3152g00003 1029 Gene3D Transferase(Phosphotransferase) domain 1 797 1021 - -
Gabi3152g00003 1029 SMART LRR_sd22_2 475 510 - -
Gabi3152g00003 1029 SMART LRR_sd22_2 132 161 - -
Gabi3152g00003 1029 SMART LRR_sd22_2 324 347 - -
Gabi3152g00003 1029 SMART LRR_sd22_2 427 453 - -
Gabi3152g00003 1029 SMART LRR_sd22_2 277 303 - -
Gabi3152g00003 1029 SMART LRR_sd22_2 572 598 - -
Gabi3152g00003 1029 SUPERFAMILY L domain-like 380 635 - -
Gabi3152g00003 1029 PRINTS Leucine-rich repeat signature 572 585 - -
Gabi3152g00003 1029 PRINTS Leucine-rich repeat signature 478 491 - -
Gabi3152g00003 1029 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
Gabi3152g00003 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672|GO:0006468
Gabi3152g00003 1029 SMART serkin_6 715 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3152g00003 1029 CDD STKc_IRAK 721 1017 - -
Gabi3152g00003 1029 Gene3D Phosphorylase Kinase; domain 1 677 796 - -
Gabi3152g00003 1029 FunFam LRR receptor-like serine/threonine-protein kinase EFR 686 796 - -
Gabi3152g00003 1029 Pfam Leucine rich repeat 550 609 IPR001611 GO:0005515
Gabi3152g00003 1029 SUPERFAMILY L domain-like 41 337 - -
Gabi3152g00003 1029 Gene3D Ribonuclease Inhibitor 206 350 IPR032675 -
Gabi3152g00003 1029 Gene3D Ribonuclease Inhibitor 351 641 IPR032675 -
Gabi3152g00003 1029 Pfam Protein kinase domain 717 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3152g00003 1029 SMART LRR_typ_2 132 156 IPR003591 -
Gabi3152g00003 1029 SMART LRR_typ_2 451 475 IPR003591 -
Gabi3152g00003 1029 SMART LRR_typ_2 403 426 IPR003591 -
Gabi3152g00003 1029 SMART LRR_typ_2 572 595 IPR003591 -
Gabi3152g00003 1029 SMART LRR_typ_2 252 276 IPR003591 -
Gabi3152g00003 1029 SMART LRR_typ_2 277 301 IPR003591 -
Gabi3152g00003 1029 SMART LRR_typ_2 524 548 IPR003591 -
Gabi3152g00003 1029 SMART LRR_typ_2 204 228 IPR003591 -
Gabi3152g00003 1029 SMART LRR_typ_2 476 499 IPR003591 -
Gabi3152g00003 1029 ProSiteProfiles Protein kinase domain profile. 715 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3152g00003 1029 SUPERFAMILY Protein kinase-like (PK-like) 689 1014 IPR011009 -
Gabi3152g00003 1029 PANTHER OS04G0122200 PROTEIN 227 1008 - -
Gabi3152g00003 1029 Gene3D Ribonuclease Inhibitor 41 200 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3152g00003 Gabi-Chr3152 20941 24130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3152g00003 41 1021 Receptor kinase-like Gene Family AT3G47570 46.270 0.0 866
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi3152g00003 Pkinase 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3152g00003 - - aprc:113870110 1505.35