Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3151g00031 ATGTTGGGTAAATGTGAGAAAATGGTAGTCACCCCTCCGACAATGACTAAAAAATGGACACAGAGTGAGATAGATGATCATAAGCTCTCGATGGCTTCCTCTAGTAGGGTTATGGAAAAACCAGGTCAAGAGCTTCAACAGCAGCAACAACAAGCCCTCAATTGCCCTCGTTGTGACTCATCAAACACCAAGTTCTGCTACTACAACAACTACAGCTTGTCACAGCCAAGGTACTTCTGCAAAGCCTGCAAGCGATACTGGACAAAAGGTGGAACTCTGAGGAACGTTCCCGTTGGCGGTGGTTGCAGAAAAAACAAGCGTGTCAAACGCCCCACCTCCTCCACCATTGACAACACTGCTTCTCCTTCTTCTTCTTCCAATCCTAGTGCCAATTCAAACCCTCCTTCTCAACCCCAGATCGATAGTACCGCTTCCACCTCAAATCACATCAATCCATTTTTTTATGGGTTACCCACTAACTCTTATGATGTCATGAATCTTCAGTTTCCAAAGTTTAACTCTGGAGTCTCGAGTTCTGGGTATGATCTTCAGCCTCAGCTGAATGCCCTTGGATTAGGTTTCACATCAGGGATTATGTCCAGTGAAGTTAGTCATAATGGTTACCGAAATGGGTTTACTTCAAATAACACTTTCCTTTCTCCTTATAATTCAATCTTTGGTTCTTCTTCAACTTCTATGGTTTCTACTCCTGCTATGGCTTCCATGCTGAACTCTACTCTAGTACAACAAAAGTTCATCAAAGATGGTCCAAGTAGCAACACTTTCCGGTGCTTAGCCCCGCTAGAAGAGCTGCAAATGGAAGGTAATAATATTGAGGCAGGGATGATGGATTCAAAAGAAGTGAAAGTTGAAGAACAAAACAAGTTAGAGTTGAATGGTGCTTGCCAAAATCAGATCGAACATATGGGCCTGTCTGATCCTTCATTTTATTGGAACACAACAACAACTTTGAGTGCTTGGAATGATCAGCCTAATATTGGTCCTTCAGTAACATCTCTGATCTAG 1026 0.4279 MLGKCEKMVVTPPTMTKKWTQSEIDDHKLSMASSSRVMEKPGQELQQQQQQALNCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTKGGTLRNVPVGGGCRKNKRVKRPTSSTIDNTASPSSSSNPSANSNPPSQPQIDSTASTSNHINPFFYGLPTNSYDVMNLQFPKFNSGVSSSGYDLQPQLNALGLGFTSGIMSSEVSHNGYRNGFTSNNTFLSPYNSIFGSSSTSMVSTPAMASMLNSTLVQQKFIKDGPSSNTFRCLAPLEELQMEGNNIEAGMMDSKEVKVEEQNKLELNGACQNQIEHMGLSDPSFYWNTTTTLSAWNDQPNIGPSVTSLI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3151g00031 341 MobiDBLite consensus disorder prediction 98 143 - -
Gabi3151g00031 341 Pfam Dof domain, zinc finger 51 107 IPR003851 GO:0003677|GO:0006355
Gabi3151g00031 341 ProSitePatterns Zinc finger Dof-type signature. 55 91 IPR003851 GO:0003677|GO:0006355
Gabi3151g00031 341 MobiDBLite consensus disorder prediction 112 143 - -
Gabi3151g00031 341 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 39 228 IPR045174 GO:0003700|GO:0006355
Gabi3151g00031 341 ProSiteProfiles Zinc finger Dof-type profile. 53 107 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3151g00031 Gabi-Chr3151 308870 310781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3151g00031 53 341 C2C2-Dof Transcription Factor Family AT1G28310 38.710 4.90e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi3151g00031 zf-Dof 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3151g00031 - - qsa:O6P43_031858 393.275