Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3151g00027 ATGCCAGCACAGAAGCGCTCGACGGAGGCTCCGGAGGAGGATGTTCAGGGAAACAACCATGAACAGCCCGAAGATGAAGTCGAATCCGATGGAAGCGATTCGTCGAGCGAAGAGGACGAAGACGAATATGTGTCTATAAAGTTGTCAGATATACGCAAAGAAGTTCAGTGTCCTATCTGCCTAGGCATCATTCGAAAAACAAGAACTGTAATGGAATGCCTGCATCGCTTTTGCAGAGAGTGCATAGACAAATCCATGCGCCTTGGTAACAATGAATGCCCTGCTTGCCGTACACATTGTGCTAGCCGACGCTCACTTAGAGATGACCCAAACTATGATGCCTTGATTGCTGCTCTCTATCCAGATATTGACAAGTATGAGGAGGAGGAATTGGCTTTGCATGAAGATGAGATGGCTCACAATAAGCAGAAGATTCAAGATTCCATTGCCCAGACTCTTCAACGACAAACAGAAGCATTGGGTGGTAAGAAACGGAATGCTAAAGCAACAGCAGCGGCTTTTGTGAGGAGGTCACAAGGTAACTATCGCTCTTCACACCTGAGGAGACGAAGAAACTTTAGAAATGCTGGTGAACTTCAGGAATCCAATGACAATGAGGATATGAATGATAATGATGGGGTAAAGGACTCATCTTCTGGTGATGAGCAGACAGAAACCAAACCAAAAAAATGCAAAAGAGGTGGAGAACGCGAAACACAATTTCCTCAACATTCTACCTTTACTGATGGGGATGGAGCTGGTGATGAAAACACTCCAGAAGTGAATAGAGAAATAATAAGTTCATCTGGTACACTTGCCTGGGGAAAAAATGGCCACAGGAGTCACACCCGCGTCAATGGTAAGAATGCCAGAAACAGTCGCCTATCCAAGCTGGTTGATCATCTCCGTAACTTAGAAGTAAATGATGATGAGTTGGATATCCATCTCATGCTTGTCTCTTTGGATGAGCAAAGAACACCAAGTTTGCAGGAGCCATACCTTTGCTGCAGGCCTACTTTGTCAGTCAGGAACCTGTGCCAGTATGTTGCCCTTAAAGCTTCGCTGCAGGCCGATGAAGTCGAATTATGCTTGGTAAAAGAGCCGCAAGCCGAAATTATAAGAGCTGAAAGAACAGTTGATCCGGACAAAGATAAGTTGCATGTTCTAAGAGATCAAGAAACTTTGGCTGAACTGAAAACTTATCATAATGTCAGCTGTGGTGGTTATCTGCTCATGGCTTATAAGAGGAAGTTGCAGAACTGA 1263 0.4473 MPAQKRSTEAPEEDVQGNNHEQPEDEVESDGSDSSSEEDEDEYVSIKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELALHEDEMAHNKQKIQDSIAQTLQRQTEALGGKKRNAKATAAAFVRRSQGNYRSSHLRRRRNFRNAGELQESNDNEDMNDNDGVKDSSSGDEQTETKPKKCKRGGERETQFPQHSTFTDGDGAGDENTPEVNREIISSSGTLAWGKNGHRSHTRVNGKNARNSRLSKLVDHLRNLEVNDDELDIHLMLVSLDEQRTPSLQEPYLCCRPTLSVRNLCQYVALKASLQADEVELCLVKEPQAEIIRAERTVDPDKDKLHVLRDQETLAELKTYHNVSCGGYLLMAYKRKLQN 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3151g00027 420 SUPERFAMILY RING/U-box 44 128 - -
Gabi3151g00027 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 127 IPR013083 -
Gabi3151g00027 420 MobiDBLite consensus disorder prediction 26 40 - -
Gabi3151g00027 420 PANTHER OS11G0578200 PROTEIN 12 419 IPR044592 -
Gabi3151g00027 420 CDD RING-HC_RING1-like 54 119 - -
Gabi3151g00027 420 MobiDBLite consensus disorder prediction 208 239 - -
Gabi3151g00027 420 ProSiteProfiles Zinc finger RING-type profile. 57 97 IPR001841 -
Gabi3151g00027 420 SMART ring_2 57 96 IPR001841 -
Gabi3151g00027 420 MobiDBLite consensus disorder prediction 1 43 - -
Gabi3151g00027 420 ProSitePatterns Zinc finger RING-type signature. 73 82 IPR017907 -
Gabi3151g00027 420 MobiDBLite consensus disorder prediction 261 276 - -
Gabi3151g00027 420 MobiDBLite consensus disorder prediction 157 290 - -
Gabi3151g00027 420 MobiDBLite consensus disorder prediction 7 25 - -
Gabi3151g00027 420 Pfam Zinc finger, C3HC4 type (RING finger) 56 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3151g00027 Gabi-Chr3151 240076 246480 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3151g00027 41 193 C3H Transcription Factor Family AT2G30580 26.115 3.60e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3151g00027 K10695 - qsa:O6P43_031861 518.85