Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3151g00026 ATGCCAGCACAGAAGCGCTCGACGGAGGCTCCGGAGGAGGATGTTCAGGGAAACAACCATGAACAGCCCGAAGATGAAGTCGAATCCGATGGAAGCGATTCGTCGAGCGAAGAGGACGAAGACGAATATGTGTCTATAAAGTTGTCAGATATACGCAAAGAAGTTCAGTGTCCTATCTGCCTAGGCATCATTCGAAAAACAAGAACTGTAATGGAATGCCTGCATCGCTTTTGCAGAGAGTGCATAGACAAATCCATGCGCCTTGGTAACAATGAATGCCCTGCTTGCCGTACACATTGTGCTAGCCGACGCTCACTTAGAGATGACCCAAACTATGATGCCTTGATTGCTGCTCTCTATCCAGATATTGACAAGTATGAGGAGGAGGAATTGGCTTTGCATGAAGATGAGATGGCTCACAATAAGCAGATTCAAGATTCCATTGCCCAGACTCTTCAACGACAAACAGAAGCATTGGGTGGTAAGAAACGGAATGCTAAAGCAACAGCAGCGGCTTTTGTGAGGAGGTCACAAGGTAACTATCGCTCTTCACACCTGAGGAGACGAAGAAACTTTAGAAATGCTGGTGAACTTCAGGAATCCAATGACAATGAGGATATGAATGATAATGATGGGGTAAAGGACTCATCTTCTGGTGATGAGCAGACAGAAACCAAACCAAAAAAATGCAAAAGAGGTGGAGAACGCGAAACACAATTTCCTCAACATTCTACCTTTACTGATGGGGATGGAGCTGGTGATGAAAACACTCCAGAAGTGAATAGAGAAATAATAAGTTCATCTGGTACACTTGCCTGGGGAAAAAATGGCCACAGGAGTCACACCCGCGTCAATGGTAAGAATGCCAGAAACAGTCGCCTATCCAAGCTGGTTGATCATCTCCGTAACTTAGAAGTAAATGATGATGAGTTGGATATCCATCTCATGCTTGTCTCTTTGGATGAGCAAAGAACACCAAGTTTGCAGGAGCCATACCTTTGCTGCAGGCCTACTTTGTCAGTCAGGAACCTGTGCCAGTATGTTGCCCTTAAAGCTTCGCTGCAGGCCGATGAAGTCGAATTATGCTTGGTAAAAGAGCCGCAAGCCGAAATTATAAGAGCTGAAAGAACAGTTGATCCGGACAAAGATAAGTTGCATGTTCTAAGAGATCAAGAAACTTTGGCTGAACTGAAAACTTATCATAATGTCAGCTGTGGTGGTTATCTGCTCATGGCTTATAAGAGGAAGTTGCAGAACTGA 1260 0.4476 MPAQKRSTEAPEEDVQGNNHEQPEDEVESDGSDSSSEEDEDEYVSIKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELALHEDEMAHNKQIQDSIAQTLQRQTEALGGKKRNAKATAAAFVRRSQGNYRSSHLRRRRNFRNAGELQESNDNEDMNDNDGVKDSSSGDEQTETKPKKCKRGGERETQFPQHSTFTDGDGAGDENTPEVNREIISSSGTLAWGKNGHRSHTRVNGKNARNSRLSKLVDHLRNLEVNDDELDIHLMLVSLDEQRTPSLQEPYLCCRPTLSVRNLCQYVALKASLQADEVELCLVKEPQAEIIRAERTVDPDKDKLHVLRDQETLAELKTYHNVSCGGYLLMAYKRKLQN 419
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi3151g00026 419 MobiDBLite consensus disorder prediction 260 275 - -
Gabi3151g00026 419 MobiDBLite consensus disorder prediction 156 289 - -
Gabi3151g00026 419 SUPERFAMILY RING/U-box 44 128 - -
Gabi3151g00026 419 MobiDBLite consensus disorder prediction 26 40 - -
Gabi3151g00026 419 CDD RING-HC_RING1-like 54 119 - -
Gabi3151g00026 419 PANTHER OS11G0578200 PROTEIN 12 418 IPR044592 -
Gabi3151g00026 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 127 IPR013083 -
Gabi3151g00026 419 ProSiteProfiles Zinc finger RING-type profile. 57 97 IPR001841 -
Gabi3151g00026 419 SMART ring_2 57 96 IPR001841 -
Gabi3151g00026 419 MobiDBLite consensus disorder prediction 1 43 - -
Gabi3151g00026 419 MobiDBLite consensus disorder prediction 207 238 - -
Gabi3151g00026 419 ProSitePatterns Zinc finger RING-type signature. 73 82 IPR017907 -
Gabi3151g00026 419 MobiDBLite consensus disorder prediction 7 25 - -
Gabi3151g00026 419 Pfam Zinc finger, C3HC4 type (RING finger) 56 96 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi3151g00026 Gabi-Chr3151 240076 246480 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3151g00026 50 120 C3H Transcription Factor Family AT3G23060 32.432 2.53e-06 47.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3151g00026 K10695 - qsa:O6P43_031861 523.472