Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3151g00025 ATGCCAGCACAGAAGCGCTCGACGGAGGCTCCGGAGGAGGATGTTCAGGGAAACAACCATGAACAGCCCGAAGATGAAGTCGAATCCGATGGAAGCGATTCGTCGAGCGAAGAGGACGAAGACGAATATGTGTCTATAAAGTTGTCAGATATACGCAAAGAAGTTCAGTGTCCTATCTGCCTAGGCATCATTCGAAAAACAAGAACTGTAATGGAATGCCTGCATCGCTTTTGCAGAGAGTGCATAGACAAATCCATGCGCCTTGGTAACAATGAATGCCCTGCTTGCCGTACACATTGTGCTAGCCGACGCTCACTTAGAGATGACCCAAACTATGATGCCTTGATTGCTGCTCTCTATCCAGATATTGACAAGTATGAGGAGGAGGAATTGGCTTTGCATGAAGATGAGATGGCTCACAATAAGCAGACTCTTCAACGACAAACAGAAGCATTGGGTGGTAAGAAACGGAATGCTAAAGCAACAGCAGCGGCTTTTGTGAGGAGGTCACAAGGTAACTATCGCTCTTCACACCTGAGGAGACGAAGAAACTTTAGAAATGCTGGTGAACTTCAGGAATCCAATGACAATGAGGATATGAATGATAATGATGGGGTAAAGGACTCATCTTCTGGTGATGAGCAGACAGAAACCAAACCAAAAAAATGCAAAAGAGGTGGAGAACGCGAAACACAATTTCCTCAACATTCTACCTTTACTGATGGGGATGGAGCTGGTGATGAAAACACTCCAGAAGTGAATAGAGAAATAATAAGTTCATCTGGTACACTTGCCTGGGGAAAAAATGGCCACAGGAGTCACACCCGCGTCAATGGTAAGAATGCCAGAAACAGTCGCCTATCCAAGCTGGTTGATCATCTCCGTAACTTAGAAGTAAATGATGATGAGTTGGATATCCATCTCATGCTTGTCTCTTTGGATGAGCAAAGAACACCAAGTTTGCAGGAGCCATACCTTTGCTGCAGGCCTACTTTGTCAGTCAGGAACCTGTGCCAGTATGTTGCCCTTAAAGCTTCGCTGCAGGCCGATGAAGTCGAATTATGCTTGGTAAAAGAGCCGCAAGCCGAAATTATAAGAGCTGAAAGAACAGTTGATCCGGACAAAGATAAGTTGCATGTTCTAAGAGATCAAGAAACTTTGGCTGAACTGAAAACTTATCATAATGTCAGCTGTGGTGGTTATCTGCTCATGGCTTATAAGAGGAAGTTGCAGAACTGA 1239 0.4479 MPAQKRSTEAPEEDVQGNNHEQPEDEVESDGSDSSSEEDEDEYVSIKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELALHEDEMAHNKQTLQRQTEALGGKKRNAKATAAAFVRRSQGNYRSSHLRRRRNFRNAGELQESNDNEDMNDNDGVKDSSSGDEQTETKPKKCKRGGERETQFPQHSTFTDGDGAGDENTPEVNREIISSSGTLAWGKNGHRSHTRVNGKNARNSRLSKLVDHLRNLEVNDDELDIHLMLVSLDEQRTPSLQEPYLCCRPTLSVRNLCQYVALKASLQADEVELCLVKEPQAEIIRAERTVDPDKDKLHVLRDQETLAELKTYHNVSCGGYLLMAYKRKLQN 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3151g00025 412 PANTHER OS11G0578200 PROTEIN 12 411 IPR044592 -
Gabi3151g00025 412 SUPERFAMILY RING/U-box 44 128 - -
Gabi3151g00025 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 127 IPR013083 -
Gabi3151g00025 412 MobiDBLite consensus disorder prediction 26 40 - -
Gabi3151g00025 412 CDD RING-HC_RING1-like 54 119 - -
Gabi3151g00025 412 ProSiteProfiles Zinc finger RING-type profile. 57 97 IPR001841 -
Gabi3151g00025 412 SMART ring_2 57 96 IPR001841 -
Gabi3151g00025 412 MobiDBLite consensus disorder prediction 1 43 - -
Gabi3151g00025 412 MobiDBLite consensus disorder prediction 140 252 - -
Gabi3151g00025 412 MobiDBLite consensus disorder prediction 200 231 - -
Gabi3151g00025 412 ProSitePatterns Zinc finger RING-type signature. 73 82 IPR017907 -
Gabi3151g00025 412 Pfam Zinc finger, C3HC4 type (RING finger) 56 96 - -
Gabi3151g00025 412 MobiDBLite consensus disorder prediction 263 282 - -
Gabi3151g00025 412 MobiDBLite consensus disorder prediction 7 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3151g00025 Gabi-Chr3151 240076 246480 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3151g00025 50 120 C3H Transcription Factor Family AT3G23060 32.432 2.48e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3151g00025 K10695 - qsa:O6P43_031861 507.294