Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3151g00022 ATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTGGAGAGTTCAGATACCATAGACAATGTGAAAGCCAAGATTCAAGACAAGGAAGGGATCCCACCAGACCAGCAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGATGGGCGTACCCTTGCTGATTACAACATCCAAAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTTAAGACCCTGACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCTGACACGATTGACAATGTTAAGGCCAAGATTCAAGACAAAGAGGGAATCCCACCAGACCAACAGAGGCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGAACATTGGCTGATTACAACATTCAGAAAGAATCCACCCTCCACTTGGTGCTCCGCCTTCGTGGTGGAATGCAAATCTTTGTTAAGACCCTCACTGGAAAGACCATTACCCTTGAGGTGGAGAGTTCCGACACCATTGACAATGTTAAGGCCAAGATTCAAGACAAAGAAGGAATCCCACCAGACCAACAGAGGCTCATCTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACCTTGGCTGATTACAACATCCAGAAAGAGTCAACTCTCCACCTTGTCTTGAGACTCCGTGGTGGCATGCAAATTTTCGTGAAGACCCTTACTGGCAAGACAATCACTTTGGAAGTAGAGAGCTCGGACACAATTGACAATAAAGAGTCCACTCTTCACCTTGTCCTTCGTCTGAGGGGAGGTATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACTATCACATTGGAGGTTGAAAGTTCGGACACAATTGATAATGTCAAAGCAAAAATCCAGGACAAGGAGGGAATCCCACCAGACCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTGTTGCGTCTTCGTGGTGGATGTTGA 1035 0.4744 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGC 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3151g00022 344 ProSiteProfiles Ubiquitin domain profile. 268 343 IPR000626 GO:0005515
Gabi3151g00022 344 CDD Ubl_ubiquitin 268 343 - -
Gabi3151g00022 344 SUPERFAMILY Ubiquitin-like 228 261 IPR029071 -
Gabi3151g00022 344 CDD Ubl_ubiquitin 1 76 - -
Gabi3151g00022 344 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Gabi3151g00022 344 CDD Ubl_ubiquitin 153 228 - -
Gabi3151g00022 344 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Gabi3151g00022 344 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Gabi3151g00022 344 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Gabi3151g00022 344 PANTHER UBIQUITIN 229 253 - -
Gabi3151g00022 344 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Gabi3151g00022 344 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Gabi3151g00022 344 SMART ubq_7 1 72 IPR000626 GO:0005515
Gabi3151g00022 344 SMART ubq_7 268 339 IPR000626 GO:0005515
Gabi3151g00022 344 SMART ubq_7 77 148 IPR000626 GO:0005515
Gabi3151g00022 344 SMART ubq_7 153 224 IPR000626 GO:0005515
Gabi3151g00022 344 FunFam Polyubiquitin 3 153 228 - -
Gabi3151g00022 344 Gene3D - 229 256 - -
Gabi3151g00022 344 Gene3D - 77 152 - -
Gabi3151g00022 344 Gene3D - 1 76 - -
Gabi3151g00022 344 Gene3D - 267 344 - -
Gabi3151g00022 344 Gene3D - 153 228 - -
Gabi3151g00022 344 FunFam Polyubiquitin-C 229 266 - -
Gabi3151g00022 344 FunFam Polyubiquitin 3 77 152 - -
Gabi3151g00022 344 Pfam Ubiquitin family 270 341 IPR000626 GO:0005515
Gabi3151g00022 344 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Gabi3151g00022 344 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Gabi3151g00022 344 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Gabi3151g00022 344 CDD Ubl_ubiquitin 77 152 - -
Gabi3151g00022 344 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Gabi3151g00022 344 PRINTS Ubiquitin signature 32 52 IPR019956 -
Gabi3151g00022 344 PRINTS Ubiquitin signature 53 74 IPR019956 -
Gabi3151g00022 344 PRINTS Ubiquitin signature 11 31 IPR019956 -
Gabi3151g00022 344 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Gabi3151g00022 344 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Gabi3151g00022 344 FunFam Polyubiquitin 3 268 343 - -
Gabi3151g00022 344 ProSitePatterns Ubiquitin domain signature. 294 319 IPR019954 -
Gabi3151g00022 344 SUPERFAMILY Ubiquitin-like 254 343 IPR029071 -
Gabi3151g00022 344 FunFam Polyubiquitin 3 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3151g00022 Gabi-Chr3151 221401 223522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3151g00022 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 4.24e-48 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3151g00022 K08770 - dpp:DICPUDRAFT_94309 623.239