Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3145g00013 ATGTATTGGGTTCATTCTCAAATCTGCCATAGCAGTGATGCTATCAACAATCCCACTGTTATTTCCCCACCTTCTTCTACTTCTTCTTCTTCTGCTTGTTCTTCTTTGTCTTACAGTTCTGACTACAAGAAACAATTAGCCCCACCACCTTTAGCTTCTTCATCTGGCAATAGACTAAGCCCTGCATTTGTTTTCATCATAGTCATTTTAGCTATTGTATTTTTCATCTCTGGTATCCTTCACTTGCTTGTTAGATTTCTCATAAAGCAAAGGTCCCCTTCATCAATTTCTCAATCCAATAGGTACCCTGACATGTCTGAATCCGATCCTTACCAAAGACAGTTACAGCAGCTCTTCCATCTTCATGATTCAGGCCTAGATCAGGCTTTCATAGATGCCCTTCCTGTTTTCCTTTACGAAGAGATAATTGGTTTGAAAGAGCCTTTTGATTGTGCTGTTTGCCTTTGCCAATTCTCAGAACAAGACATGCTTAGATTGCTACCTATTTGTAATCATGCTTTTCACATTGACTGCATAGACACATGGCTGCTGTCTAATTCAACTTGTCCTCTCTGTAGAGGGAGTCTTTATGAACCAGGCTTTTCCTTTGAAAACCCAGTTTATGACTTTGAGGGTCTAAGGGAAGAAGATGGGGTTTCAGGCAGTGTTGTTGCTGATGCTGCTTCTGTTAACAAACATGCAGAAAATCACATAATGAGTGGGAAAAGGGTGTTTTCTGTTAGGCTTGGAAAATTTAGAAGCTCAAATAATGGAGATGGGGTGGAAAGAGTTGAAGGAGAGAGCAGTACAAGTATTGTGGATGTTAGGAGATGCTATTCTATGGGGTCTTTCCAGTATGTGGTTGCTGATTCAGATTTGCAAGTGGCTTTGTGCCACAAGAAAGGTGATGGAGTAGGTATTGGTAGCAGTATGAGACAATTGAAAGGGAGATTTGCCCAAATTGGGAATTCTTCCACTGATGGGGATGTTGAGGGGGGAAAAATCAACATTGCTAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCTATGGTCTAGGAAGGATAAAGTATCAAGTTCACCAGAAACCCATTTGGGTAATTCTAATGTCACTGCAACTTTGCCTCAGATGAATAGAGCTCAAGTTGAAATGTTACTAATCCAAATCGTGAGCACGAGTTATGAATGCTACTCCCTCGCTGCATTTATTCTTCTTTGTTTTTGA 1227 0.4059 MYWVHSQICHSSDAINNPTVISPPSSTSSSSACSSLSYSSDYKKQLAPPPLASSSGNRLSPAFVFIIVILAIVFFISGILHLLVRFLIKQRSPSSISQSNRYPDMSESDPYQRQLQQLFHLHDSGLDQAFIDALPVFLYEEIIGLKEPFDCAVCLCQFSEQDMLRLLPICNHAFHIDCIDTWLLSNSTCPLCRGSLYEPGFSFENPVYDFEGLREEDGVSGSVVADAASVNKHAENHIMSGKRVFSVRLGKFRSSNNGDGVERVEGESSTSIVDVRRCYSMGSFQYVVADSDLQVALCHKKGDGVGIGSSMRQLKGRFAQIGNSSTDGDVEGGKINIARKGESFSVSKIWLWSRKDKVSSSPETHLGNSNVTATLPQMNRAQVEMLLIQIVSTSYECYSLAAFILLCF 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3145g00013 408 FunFam RING-H2 finger protein ATL46 113 198 - -
Gabi3145g00013 408 SUPERFAMILY RING/U-box 130 199 - -
Gabi3145g00013 408 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 54 350 - -
Gabi3145g00013 408 Pfam Ring finger domain 150 193 IPR001841 -
Gabi3145g00013 408 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Gabi3145g00013 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 198 IPR013083 -
Gabi3145g00013 408 SMART ring_2 151 192 IPR001841 -
Gabi3145g00013 408 CDD RING-H2_EL5-like 150 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3145g00013 Gabi-Chr3145 138972 147633 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3145g00013 78 357 C3H Transcription Factor Family AT2G18650 39.806 1.11e-56 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3145g00013 - - gmx:100818135 578.17