Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3142g00043 ATGAGTGCTCCGTCGCGAGAAGAGGAGTCCAAAGAAGATGACAAGGACGGAGAGGCTAACAGGTTGCTACAAGGGCAATCGGAGGAGGAAGAGGAGGCATATGAAGCGGGGGAGAAGATCCGGGTCGTAGATTTTGACTTTGATTCCGGGGATGATTCGAGTGTGCCTCCTTTCTCGTGGAAGAAGCTGTGGCTATTCACAGGGCCTGGGTTTCTAATGAGCATAGCGTTCTTGGATCCGGGGAATCTGGAAGGGGATCTCCAAGCTGGAGCCATCGCCGGTTACTCTCTCCTGTGGTTGTTGATGTGGGCCACGTTCATGGGCCTGTTGATCCAGCTTCTCTCTGTGAGGGTTGGTGTGGCCACGGGTCGAAACCTCGCTGAGCTCTGCAGAGACGAGTATCCTGATTGGGCTCGGTTTGTGCTTTGGTTTATGGCTGAGCTGGCCTTGATTGGTGCTGATATTCAAGAGGTCATTGGGAGTGCCATCGCCATCCAAATTCTTAGCCGAGGACTCCTTCCCCTCTGGGCTGGAGTTTTGATTACTGCTTCCGATTGCTTTGTCTTTCTGTTTCTTGAGAACTATGGAGTTAGGAAGTTGGAAGCTGCTTTTGCAGTTCTTATTGCTACTATGGCTCTTTCTTTTGCCTGGATGTTTGGTGACACAAAACCTAGTGGAAAAGAACTTTTGATGGGTATTTTGGTTCCAAGACTTAGCTCAAAAACAATTCGTCAGGCTGTGGCCGTTGTTGGTTGTGTCATAATGCCTCATAATGTATTCCTGCATTCTGCTTTAGTACAATCAAGGAAGATTGATCCCCATAAGAAAGGCCAGGTACAGGAGGCTATCAACTACTATTCGATTGAGTCATCGGCTGCACTTTTAGTCTCCTTCATGATCAACCTATTTGTCACAACAGTTTTTGCTAAGGGTTTCTACGGTACAAAGCAGGCAAATAGCATAGGATTGGTGAATGCAGGGCAGTATCTTGAGGAAAAGTATGGAGGAGGGCTCTTCCCTATTCTCTATATATGGGGAATCGGGTTATTGGCAGCTGGACAGAGTAGCACCATCACTGGCACATATGCTGGGCAATTCATAATGGAGGGTTTCCTCAACCTTCCTTTAAAGAAATGGTTGAGAGCATTGATCACTCGAAGTTTTGCAATTGTGCCAACTATAATTGTAGCTATTGTTTTTAATAGGTCAGAAGCTTCATTGGATGTTTTGAATGAATGGCTTAATGTGCTTCAGTCCATGCAAATTCCCTTTGCATTAGTTCCCCTCCTCACGATGGTCTCCAAAGAGCAGATCATGGGGACCTTTAAGGTTGGGCGTATTCTTGAGAGGGTGGCATGGACTGTTGCTGCACTGATTATAGTAATTAATGGGTATCTCTTATTAGATTTTTTTCTTTCTGAGGTGAACGGCCTATTGCTTGGTTTCGTAGCCTGCGCCTGCACAGTTGCTTATGTTGCATTCATTGTATATTTGATTTCACAAAGCGGTGCTCTTCCTTCCGCTTGGGTTAATCGACTTCCCAAGGGGTTTTCTTTTATTGGGAATTAA 1569 0.4602 MSAPSREEESKEDDKDGEANRLLQGQSEEEEEAYEAGEKIRVVDFDFDSGDDSSVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATFMGLLIQLLSVRVGVATGRNLAELCRDEYPDWARFVLWFMAELALIGADIQEVIGSAIAIQILSRGLLPLWAGVLITASDCFVFLFLENYGVRKLEAAFAVLIATMALSFAWMFGDTKPSGKELLMGILVPRLSSKTIRQAVAVVGCVIMPHNVFLHSALVQSRKIDPHKKGQVQEAINYYSIESSAALLVSFMINLFVTTVFAKGFYGTKQANSIGLVNAGQYLEEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMEGFLNLPLKKWLRALITRSFAIVPTIIVAIVFNRSEASLDVLNEWLNVLQSMQIPFALVPLLTMVSKEQIMGTFKVGRILERVAWTVAALIIVINGYLLLDFFLSEVNGLLLGFVACACTVAYVAFIVYLISQSGALPSAWVNRLPKGFSFIGN 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3142g00043 522 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 61 439 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3142g00043 522 PRINTS Natural resistance-associated macrophage protein signature 172 191 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3142g00043 522 PRINTS Natural resistance-associated macrophage protein signature 197 218 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3142g00043 522 PRINTS Natural resistance-associated macrophage protein signature 246 269 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3142g00043 522 PRINTS Natural resistance-associated macrophage protein signature 353 372 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3142g00043 522 PRINTS Natural resistance-associated macrophage protein signature 142 168 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3142g00043 522 PRINTS Natural resistance-associated macrophage protein signature 381 398 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3142g00043 522 PRINTS Natural resistance-associated macrophage protein signature 415 434 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3142g00043 522 MobiDBLite consensus disorder prediction 1 36 - -
Gabi3142g00043 522 Pfam Natural resistance-associated macrophage protein 84 445 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3142g00043 522 NCBIfam Nramp family divalent metal transporter 68 437 - -
Gabi3142g00043 522 Hamap Divalent metal cation transporter MntH [mntH]. 49 471 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3142g00043 522 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 46 500 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3142g00043 Gabi-Chr3142 460059 468717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3142g00043 7 502 Inorganic Solute Cotransporters AT1G47240 80.000 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3142g00043 K21398 - gmx:100795013 880.167