Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3142g00042 ATGGGGAGAGTGAAGCTTCCGATCAAAAAGATTGAAAACACAACAAATAGGCAAGTCACTTTCTCAAAGAGGAGGAATGGTTTAATCAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGTTGATGTAGCTCTCATCATGTTTTCCCCATCTGGGAGAGCCAGTCTCTTCTCTGGGACCAGAAGCATTGAAGAAATTCTAGAACGATATATTAATCTTCCGGAGAATGAACGTGGACGGATACATAATCAAGAGCACATTCAAAAGGTGCTTAGAAAGTTGAAAGTTGAAGCCGATCAAATATGCCAAGCCCCTAGCCCGATGACTACAGACTCCCAACTTGAGGAGATTCAAAGAGAAATTTTCATTTGCAAGTCTCAATTGGAAGAGATGAAGAAGCGGCTAAGGATATTCGAAGGTGATCCTTCTGAGATCACTACACTGTGTGAGGCTGAATATCGCGAACATGTCCTTCAGGAAACTCTAAAACAAGTGCAGCTGCGAAAAGTACATCTTGCAAAAACTGTAGAAGTAGATGGATTTGTTACCAGAACCTCAAAGAACGCAGTAGACTGGTTTCCACAGAGAGATTTACATGTTCAGATTCTGAACTTCGCGAATACTTATGACCCTGCTCCTCTCAGAGATCGACAATTACATAGTTCTGTTGTTGATATGTTAACGCCAAATTCGACACTTCTGCACTCTGCAAACATGGATCAGGATGGTCAAATGAGTCCAAGGCATAGTTTAGTGACCGGCATAAATAACACACCACCTCCTGAGTTTGGACAAGTTATCAACATTAATCCGTCCTCTTGGGAACACCTCCATCCTTTAGGAAATGGATCTTTGTCGGTTGCAGAGACAAGGGACGGACAACCACTTGAACAGTATTTTCCTCAATTTACCCTGCCAAACATTTTGATGATGAATCAGAATCAACGTATTTCCTAG 957 0.4148 MGRVKLPIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRASLFSGTRSIEEILERYINLPENERGRIHNQEHIQKVLRKLKVEADQICQAPSPMTTDSQLEEIQREIFICKSQLEEMKKRLRIFEGDPSEITTLCEAEYREHVLQETLKQVQLRKVHLAKTVEVDGFVTRTSKNAVDWFPQRDLHVQILNFANTYDPAPLRDRQLHSSVVDMLTPNSTLLHSANMDQDGQMSPRHSLVTGINNTPPPEFGQVININPSSWEHLHPLGNGSLSVAETRDGQPLEQYFPQFTLPNILMMNQNQRIS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3142g00042 318 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gabi3142g00042 318 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Gabi3142g00042 318 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 217 - -
Gabi3142g00042 318 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Gabi3142g00042 318 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Gabi3142g00042 318 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi3142g00042 318 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi3142g00042 318 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi3142g00042 318 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi3142g00042 318 Coils Coil 114 134 - -
Gabi3142g00042 318 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi3142g00042 318 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3142g00042 Gabi-Chr3142 448258 450687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3142g00042 1 172 Type I MADS-box Gene Family AT1G22130 51.087 6.60e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi3142g00042 SRF-TF 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3142g00042 - - gmx:100776548 457.988