Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3142g00040 ATGGATACTCGTGCATCAAAGAAGAGGGCTAATGCTAGAACACTTGTCTCAGATGAGAATCAACAACCCAAGTGCAAAAAGCCACGGGTTGTGTTGGGGGAACTTACTAGTGTACCCAATTTTATAGATCTGACAACTTCAAATCCCAGGATCAAGAGAGTGCAATGTCCTAAAAATCCTAGGATCAAGAAATCAGCTGCCACAAAGAGGGCCGTTTCTTTGTCGGAGAAGGATGTTCCCCAATCTAGTGAACCCTTTGAATCCGACATCTATCAGTATCTTCGCACGATGGAGATGGAGAAAAAGAGAAGACCATTGATTGACTACATTGAAAGAGTTCAGAAAGAAGTTAATGCAAACAGGAGAGGAATATTGGTGGATTGGTTAGTTGAGGTTGCAGAGGAGTACAACCTTCTCCCCGACACTCTCCATCTCTCTGTTTCCTACATTGATAGATTTTTATCAATTAATCCTATGACTAAACCCAGGCTTCAGTTGTTGGGTGTTTCCTCTTTGCTCGTTGCATCGAAATATGAAGAAATTAACCCACCCAGCGTGGAAGATTTCTGCGACATTACCGATAACACGTACAAGAAGACAGAGGTTGTAAAAATGGAAGCTGACATACTCAAGTCCCTGAATTTTGAAATGGGCAACCCAACTGTAATGACCTTTATAAGGAGGTTTGCTGGGATTGCTGGTGAGAATCAAAATACTCTAAATTCGCTGATCGAATTTTTAGGCTACTATCTGGCTGAGCTAAGTTTGTTGGACTATGATTGTATAAGATTCTTGCCTTCTATTGTGGCTGCGTCAGCTATATTTCTTGCCAGATATATTATCTTCTGGCCTGAAGTTCATCCTTGGACTTCATCCCTGTGTGAATGCTCGGGTTATAAATCAGTTGAGTTAAAAGAGTGTGTTCTCATCTTACATGACTTGTATTTGTCAAAAAGGGCAGCGTCCTTCAAAGCTGTTCGAGATAAATACGAGCAGGACAAGTACAAATACGTGGCAAACGTGATATCCCCACCAAAGATACCAAGTAATTACTTTGAAGAAGTGTAA 1068 0.411 MDTRASKKRANARTLVSDENQQPKCKKPRVVLGELTSVPNFIDLTTSNPRIKRVQCPKNPRIKKSAATKRAVSLSEKDVPQSSEPFESDIYQYLRTMEMEKKRRPLIDYIERVQKEVNANRRGILVDWLVEVAEEYNLLPDTLHLSVSYIDRFLSINPMTKPRLQLLGVSSLLVASKYEEINPPSVEDFCDITDNTYKKTEVVKMEADILKSLNFEMGNPTVMTFIRRFAGIAGENQNTLNSLIEFLGYYLAELSLLDYDCIRFLPSIVAASAIFLARYIIFWPEVHPWTSSLCECSGYKSVELKECVLILHDLYLSKRAASFKAVRDKYEQDKYKYVANVISPPKIPSNYFEEV 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3142g00040 355 ProSitePatterns Cyclins signature. 122 153 IPR006671 -
Gabi3142g00040 355 SUPERFAMILY Cyclin-like 220 345 IPR036915 -
Gabi3142g00040 355 SMART Cyclin_C_2 220 345 IPR004367 -
Gabi3142g00040 355 Pfam Cyclin, N-terminal domain 89 217 IPR006671 -
Gabi3142g00040 355 PANTHER CYCLINS 77 332 IPR039361 -
Gabi3142g00040 355 MobiDBLite consensus disorder prediction 60 80 - -
Gabi3142g00040 355 Pfam Cyclin, C-terminal domain 220 341 IPR004367 -
Gabi3142g00040 355 SMART cyclin_7 127 211 IPR013763 -
Gabi3142g00040 355 SMART cyclin_7 224 313 IPR013763 -
Gabi3142g00040 355 Gene3D - 89 340 - -
Gabi3142g00040 355 Gene3D - 103 218 - -
Gabi3142g00040 355 MobiDBLite consensus disorder prediction 1 28 - -
Gabi3142g00040 355 MobiDBLite consensus disorder prediction 1 25 - -
Gabi3142g00040 355 SUPERFAMILY Cyclin-like 83 217 IPR036915 -
Gabi3142g00040 355 FunFam Cyclin A1 207 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3142g00040 Gabi-Chr3142 435303 437032 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3142g00040 3 355 Core Cell Cycle Gene Families AT5G43080 51.117 2.96e-118 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3142g00040 K06627 - gmx:100787417 463.766