Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3142g00033 ATGCTCTCACCAAATGGCATGTTCTCTGCTGGCTTCTATGCTGTTGGTGACAATGCCTATTCCTTTGCCATTTGGTTTTCCGAATCCAATGACCAAACCCAAAACGCTACGGCGGTATGGATGGCAAACCGTGACCAGCCTGTCAACGGGAAGGGTTCAAAGCTTTCCCTACTTGACAATGGTAATCTCGCCTTAATGGATGCAGATGGATCCCTCGTTTGGTCCACAAATACTGTTTCATCGTCCTCCGTACATCTGTCTCTTGACGATGTTGGTAACCTTGTTCTGCGTGTCGGGGAGGGTGATGGTGATGGTGTCATCCTGTGGCAAAGCTTTGATTTCCCTACAGATACACTTGTTCCACAACAAGTGTTCACCAGATATGCAAAACTAGTCTCTTCAAGAAGTGACACTAACAAGTCCTCGGGTTTCTATTCACTGTTTTTCGACAGTGATAATATTCTTCGTCTTCTCTATGATGGTCCTGAAGTTTCAGCCCTTTACTGGCCAGATCCTTGGCTGCTCTCTTGGCAGGCTAATAGGGCTGTTTACAACAACAGTAGAGTTGCAGTGATGGATAGCCTTGGCAATTTTAGTTCATCAGATGAACTCACCTTTATGACATCTGATTATGGGACCGTGATCCAAAGAAGAGTCACTGTTGATTATGATGGAAATATCCGTGTTTACAGTCGGAGACACGGAGGAGAGAAATGGTCTATTACATGGCAATCCACGTCAAGACCATGCAGGATTCATGGCATCTGTGGCCCAAACAGTTTGTGCTTATATAATGCTATTTCTGGTATCAAATGCACTTGTCTTCCAGGCTATAAGATGACGAATGATGGCGATTGGGCATATGGGTGTGAACCAAAATTCTCTTTTACTTGCAACAAAACCGAGTCTCGCTTTCTAACTATAACCAACGTGGAGTTATATGGCTATGACTCCGGGTACATGACAAATTTCACACTTGATCAGTGTAAGGAGTTATGCCTGCAATTGTGCGACTGTAAAGGCATCCAGTATAGCTATGAATATGGTACTGGCACTTATACCTGTTATCCGAAGTTGAAGTTGCAGAATGGGTATCGTACACCAGATTTTAATGGTGATCTGTACTTGAGACTGCCAGCAAGCAGTTCATATTCTTATGACGAGGAGTCCGTAGATGAGTACAGTCTTTCTTGTTCCCCGAATTCAAAAATAAAACAACTCGAAAGAGCGTATGCCATAGACCATGGAAACATATATGTTAAGTTCATGCTCTGGTTTGTAGCCGGAGTGGGGGTACTCGAAATTTTGGGCGTATTTGTGGTTTGGTATTTTTTGTTAAGAACAGGGCAATATTCTGCCGCTGCACGAGACTATAGTCTGGCGTTAGCTGGCTTTAGAAAATTCAGTTATTCTGAGCTGAAAGAAGCCACCGAAGGTTTTAGTAAAGAGATCGGAAGGGGTGGAGGAGGGATTGTATACAAAGGTGTCTTGTCTGATCAACGAGTCGCAGCAGTAAAGAGACTGAAGGAAGCTAATCAAGGAGAAGAAGATTTCCTCGCGGAAGTAAGCATCATCGGAAGGCTTAACCACATGAACTTGATTGAGATGTGGGGATATTGTGCTGAGGGAAAACACAGGCTACTTGTGTACGAGTACATGGAGCATGGATCTCTAGCAGAAAATATCAAATCTGATAGATTGGATTGGACAAAAAGGTTTGACATTGCCTTAGGCATGGCAAAAGGTCTTGCTTATATCCATGAGGAGTGCTTGGAGTGGATTCTGCACTGTGATGTAAAGCCCCACAACATACTTCTTGATTCTAATTATCAGCCAAAGGTTGCAGATTTTGGGCTGTCAAAGCTGCGGAGCAGAAATGAAACTAAATACTCTAGTTTTTCAAGGATACGAGGAACCAGAGGTTACATGGCTCCTGAGTGGGTTTTAAATCAACCAATCACCTCCAAAGTTGATGTTTATAGCTACGGGATTGTTATCTTGGAAATGGTCACGGGAAAGAGCGCAACAATGGACATTCATACCTCTTATGGATTAGAGAGGCAGCGTCTCAGCCTGGTCACGTGGCTGAAAGAGAAACAGAATAAAGGTTCGGCATGGGTTAATGAAATCTTAGACCGCACGATACAAGGAGGTTACGAGGAAAGTAAGATGGAAGCTTTGGCGAGAGTGGCTTTGCAATGTGTGGAGAAAGAGAAGGACAAGAGGCCCACCATGAGCAAAGTTGTAGAGATTCTTCAGAAATCTAGCCGCGAAAAAGATAATCAGTGA 2289 0.4369 MLSPNGMFSAGFYAVGDNAYSFAIWFSESNDQTQNATAVWMANRDQPVNGKGSKLSLLDNGNLALMDADGSLVWSTNTVSSSSVHLSLDDVGNLVLRVGEGDGDGVILWQSFDFPTDTLVPQQVFTRYAKLVSSRSDTNKSSGFYSLFFDSDNILRLLYDGPEVSALYWPDPWLLSWQANRAVYNNSRVAVMDSLGNFSSSDELTFMTSDYGTVIQRRVTVDYDGNIRVYSRRHGGEKWSITWQSTSRPCRIHGICGPNSLCLYNAISGIKCTCLPGYKMTNDGDWAYGCEPKFSFTCNKTESRFLTITNVELYGYDSGYMTNFTLDQCKELCLQLCDCKGIQYSYEYGTGTYTCYPKLKLQNGYRTPDFNGDLYLRLPASSSYSYDEESVDEYSLSCSPNSKIKQLERAYAIDHGNIYVKFMLWFVAGVGVLEILGVFVVWYFLLRTGQYSAAARDYSLALAGFRKFSYSELKEATEGFSKEIGRGGGGIVYKGVLSDQRVAAVKRLKEANQGEEDFLAEVSIIGRLNHMNLIEMWGYCAEGKHRLLVYEYMEHGSLAENIKSDRLDWTKRFDIALGMAKGLAYIHEECLEWILHCDVKPHNILLDSNYQPKVADFGLSKLRSRNETKYSSFSRIRGTRGYMAPEWVLNQPITSKVDVYSYGIVILEMVTGKSATMDIHTSYGLERQRLSLVTWLKEKQNKGSAWVNEILDRTIQGGYEESKMEALARVALQCVEKEKDKRPTMSKVVEILQKSSREKDNQ 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3142g00033 762 FunFam Serine/threonine-protein kinase 116 243 - -
Gabi3142g00033 762 PIRSF SRK 1 762 IPR024171 GO:0004674
Gabi3142g00033 762 SMART serkin_6 478 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3142g00033 762 ProSitePatterns Serine/Threonine protein kinases active-site signature. 594 606 IPR008271 GO:0004672|GO:0006468
Gabi3142g00033 762 Gene3D Phosphorylase Kinase; domain 1 447 552 - -
Gabi3142g00033 762 CDD EGF 249 278 - -
Gabi3142g00033 762 Gene3D Transferase(Phosphotransferase) domain 1 553 762 - -
Gabi3142g00033 762 Gene3D - 1 114 IPR036426 -
Gabi3142g00033 762 SUPERFAMILY alpha-D-mannose-specific plant lectins 38 132 IPR036426 -
Gabi3142g00033 762 CDD PAN_AP_plant 297 379 - -
Gabi3142g00033 762 Pfam D-mannose binding lectin 37 127 IPR001480 -
Gabi3142g00033 762 SMART ntp_6 300 378 IPR003609 -
Gabi3142g00033 762 PANTHER OS07G0415500 PROTEIN 2 754 - -
Gabi3142g00033 762 ProSiteProfiles PAN/Apple domain profile. 298 379 IPR003609 -
Gabi3142g00033 762 ProSiteProfiles Protein kinase domain profile. 478 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3142g00033 762 Pfam Protein kinase domain 481 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3142g00033 762 Pfam PAN-like domain 298 355 IPR003609 -
Gabi3142g00033 762 Pfam S-locus glycoprotein domain 201 280 IPR000858 GO:0048544
Gabi3142g00033 762 SUPERFAMILY Protein kinase-like (PK-like) 461 752 IPR011009 -
Gabi3142g00033 762 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 553 761 - -
Gabi3142g00033 762 ProSiteProfiles Bulb-type lectin domain profile. 1 109 IPR001480 -
Gabi3142g00033 762 SMART blect_4 2 115 IPR001480 -
Gabi3142g00033 762 ProSitePatterns Protein kinases ATP-binding region signature. 484 506 IPR017441 GO:0005524
Gabi3142g00033 762 CDD STKc_IRAK 484 754 - -
Gabi3142g00033 762 FunFam S-receptor-like serine/threonine-protein kinase 448 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3142g00033 Gabi-Chr3142 365693 368041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3142g00033 464 759 Receptor kinase-like Gene Family AT3G58690 40.909 4.54e-65 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi3142g00033 Pkinase 2e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3142g00033 - - gmx:100792388 1104.74