Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3142g00031 ATGGTGAGAACTCCTTGTTGTGAGAAGAAGGGACCTTGGACACCGGAAGAAGATCATGTATTGATTTCTCATATTCAACGAAATGGCCATGGAAACTGGCGGGCCCTTCCAAAACAAGCTGGTTTGTTAAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATAAATTACCTGAGGCCAGGTATTAAACGTGGGAAATTCAGCAAGGAAGAAGAAGAGACCATCCTCACACTACATGGAATTCTTGGAAATAGATGGTCTGCTATTGCGGCAAGATTACCAGGACGAACGGATAACGAAATAAAGAATTTTTGGCACACCCATTTGAAGAAGAGGCTTGAGAGAAGTACTGATCAAGAGGCACAAGCAATAACTTGTAGTTCAGGGGCTTTAATAAATATGCCACGGGTAGCGGTGGATGCATCAGGTGCTATTACTTCTAGTGTTACCAATGATAGTTCGCCCTCAAGGAGAAATCTACCTATTGTGGGTCTAGGAATTTACGGTGCAGTTTCTTCTGATATTTCAGGAGAAACAAATGAGATCCATGAACAAATGGAATTTTGGTATAATCTATTCATCAAAACAGGACAATCATCCCAAGGGCATGAAATTATATAG 618 0.4175 MVRTPCCEKKGPWTPEEDHVLISHIQRNGHGNWRALPKQAGLLRCGKSCRLRWINYLRPGIKRGKFSKEEEETILTLHGILGNRWSAIAARLPGRTDNEIKNFWHTHLKKRLERSTDQEAQAITCSSGALINMPRVAVDASGAITSSVTNDSSPSRRNLPIVGLGIYGAVSSDISGETNEIHEQMEFWYNLFIKTGQSSQGHEII 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3142g00031 205 CDD SANT 65 108 IPR001005 -
Gabi3142g00031 205 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Gabi3142g00031 205 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Gabi3142g00031 205 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 121 - -
Gabi3142g00031 205 CDD SANT 12 57 IPR001005 -
Gabi3142g00031 205 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Gabi3142g00031 205 FunFam MYB-related transcription factor 9 62 - -
Gabi3142g00031 205 Gene3D - 65 127 - -
Gabi3142g00031 205 FunFam MYB transcription factor 65 112 - -
Gabi3142g00031 205 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Gabi3142g00031 205 Gene3D - 9 62 - -
Gabi3142g00031 205 SUPERFAMILY Homeodomain-like 9 104 IPR009057 -
Gabi3142g00031 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 57 IPR017930 -
Gabi3142g00031 205 SMART sant 62 110 IPR001005 -
Gabi3142g00031 205 SMART sant 9 59 IPR001005 -
Gabi3142g00031 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3142g00031 Gabi-Chr3142 331987 333075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3142g00031 1 190 MYB Transcription Factor Family AT1G06180 50.218 5.99e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3142g00031 Myb_DNA-binding 3.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3142g00031 K09422 - gmx:102663040 266.544