Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3142g00023 ATGTCTTCATCATTTCCTGTTCTTCCCTCTTCGTCAGTGTTGGCTGCCTCAATAAATTCCAACATCAGAAGTGTTGGACACATGTTTTCAACCCCTGCTGAATGCCATGATGACATCCCTTTGTCCTGTGTTTCAGAAAAAAATTCTACAACATTCATTTCTCACCCTCAAGAAAGTGATGATATATCCTGGGGACCCGATCCGTTTCAGGATATCCTTCAGTTTCCTGATCATGTTACCGTACAGAATGATCACGTGGAATATAGTGCTTCTTACATGTCTGGTGATGATACCAAAACAACTGATTACCGGGAGTGGGTTGATCAGTTAATGTCAGTTGAGGATTCTCTTCAGCCAAATTGGGGTCAACTTCTCGGTGATGATAATTTAGTAGAACCTAAATTAAAGGACACTCAGGTTTCACAGCAGCGGCAGCTTGTACCATCTAGAGAAGTTAATGATCTTCCCATCTCAGTATCGACTGCACCACAAAATAAGCCAAGAATGCGTTGGACTCCTGAACTTCATGAAGCCTTTGTGGAAGCAGTCACTCAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGTGTCTTGAATCTGATGAAAGTTGAGAGCCTTACCATCTATCATGTGAAAAGCCACCTACAGAAGTATAGAACTGCCAGATGCAAACCTGAGTCATCAGAAGGAATTCCTGAGAAAAAATTGACTTCAATTGAAGAAATGAAGTCTCTAGACTTAAAAACGACTAAGGGGATTACTGAAGCATTGCAGTTGCAGATGGAACTCCAAAAGCGGCTGCACGAACAGCTTGAGATTCAAAGAGAGTTGCAGATTCAAATTGAAAAACAAGGGAAGCGTCTTGAGATGATGTTTGAGAAACAGGTCAAATTTGACGAGCCTTCTGCTCCACTATCAAACGTAGTGCTACCTTCTCCTCCAGTTGGCAATTTAGAGACCTCAGATGAAGGTCATGAAAATTTTGGAATCAACAGTAGCACTCCAGAAACCATGCCTGGAGAAAGTTCCCAGGTTGCAAGCACAGAGCAAAAGGAAGATGATGCTAAAGTTACTGAAGAACATGAGCTGGGAGATGAGCAATTTGCTGCACCACCCACAAAACGGTTGAAGAGTTTATGA 1140 0.4254 MSSSFPVLPSSSVLAASINSNIRSVGHMFSTPAECHDDIPLSCVSEKNSTTFISHPQESDDISWGPDPFQDILQFPDHVTVQNDHVEYSASYMSGDDTKTTDYREWVDQLMSVEDSLQPNWGQLLGDDNLVEPKLKDTQVSQQRQLVPSREVNDLPISVSTAPQNKPRMRWTPELHEAFVEAVTQLGGSEKATPKGVLNLMKVESLTIYHVKSHLQKYRTARCKPESSEGIPEKKLTSIEEMKSLDLKTTKGITEALQLQMELQKRLHEQLEIQRELQIQIEKQGKRLEMMFEKQVKFDEPSAPLSNVVLPSPPVGNLETSDEGHENFGINSSTPETMPGESSQVASTEQKEDDAKVTEEHELGDEQFAAPPTKRLKSL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3142g00023 379 Coils Coil 254 274 - -
Gabi3142g00023 379 MobiDBLite consensus disorder prediction 324 346 - -
Gabi3142g00023 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 164 223 IPR017930 -
Gabi3142g00023 379 Pfam Myb-like DNA-binding domain 168 219 IPR001005 -
Gabi3142g00023 379 SUPERFAMILY Homeodomain-like 164 220 IPR009057 -
Gabi3142g00023 379 MobiDBLite consensus disorder prediction 347 368 - -
Gabi3142g00023 379 NCBIfam myb-like DNA-binding domain, SHAQKYF class 166 220 IPR006447 GO:0003677
Gabi3142g00023 379 Pfam MYB-CC type transfactor, LHEQLE motif 253 297 IPR025756 -
Gabi3142g00023 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 158 345 IPR044848 GO:0003700
Gabi3142g00023 379 MobiDBLite consensus disorder prediction 303 379 - -
Gabi3142g00023 379 Gene3D - 165 224 - -
Gabi3142g00023 379 FunFam Myb family transcription factor 165 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3142g00023 Gabi-Chr3142 288546 292386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3142g00023 43 311 G2-like Transcription Factor Family AT3G04450 46.823 7.00e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi3142g00023 Myb_DNA-binding 7.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3142g00023 - - psat:127093006 418.698