LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3142g00022	ATGGCTCTTAATCCAAGAGTTACTAAGGCCTTCGATGCTATGGGGGCCTTAGGAATTTCTTGTGAAGAGGTGAAGCCAGTGTTGAAAAATTTGTTAAAAGTGTACAATGGAAAGTGGGAACTTATTGAAGAAGACAATTATCGGACACTAATAGACTCATATTTTGAGTTGAAGGAAGATAAGCTAGTGGAAAGTAAGAGAAAAGCTCCAATAACTTGTCATGATGAAGAAAGACCGACACACAAACTGCACTTGGTAGATGGAGGTGACCAGGTTTCATCAAAAGACTGCTCAAGACAAGCATTGTCTGTAGAAGACAACGCAGTACCTCGGAAGACTATTAAACAGAAAATCAGTAAACCATCTCAAACTTCCATGGGAGATATGAAGCCCAAAACCAGTTCACAAGCATTGCAGACAAGGTTGGGTGAGGTAGAAATGATCTCAAATTTACCTTGCATGGCTGTTACCAATAGAAAATTGTATCCTAAGAAAGCTTCATCTGCCGTGCACTGTGAAAACCCAATTGATGGACCTAGCTCTTCTCATGTCCAGAGGAGAAATTTGTCAAGTGATCATTATCAGGAGGTTGTGACACCAAAAATTAAGAAACCTAAGTTACTTCTTGGACCTAATTCAACCAGTTACAGAGGCCCTTCTCATGCTTCAAATGGAAATCTTTGTGTCAAATCTCTTCATCAGGATATGCACAAGAAAGATAATAACCCAGCATGCAATAATAACACCCGAACCTATAAGGATGGTATTAATATTGCTTCTTCGCCTTTTGGAGAAGTTAAAATTTCATTAAACTGTGATGCTGCCTTGGGACAACCAAACTTCCATATTCCTAATTTGGATTCTGTTATGAGGTCCATGGATGAGAAATACCTGAGTTCTTGCAACACTGTTGAGTCCCAACTTTCTATGGTGAAGTTATTAGATGATTTATGTGAAAGTTATTTGAAGATGGGCTTGAATTTAAATCGAAATGGATCAAATCTTGTGTATGCCAATTCACACAACACGGCATGTCTACCACAACAATTTACTGAAGATGAAAAGAATTCCTTTCATTTTCTCAGTGACATAACAAAGGGTTCAGAAAATGTTAAAATATCATTATTATATGAAATTGGAAGTGAGGACTTGCCAAAGTTTAATTACATACCATATAATATAATATATCAAAGTGCTAATGTAAATATTTCACTTGCTCGGATTGCGGATGAGGGTTGCTGTTCTGATTGTTCAGGCAACTGTCTTTCGTTATCATTTCCTTGTGCATGTGCTCAAGAAACTGGTGGAGAATTTGCTTACACTCCACAAGGTTTGTTGAAAGAAGAATTTTTAACAATTTGTATGTCTATGAAAAATGATCCAAAAGACGAACATTTTGTGTATTGCCAAGAATGCCCACTGGAGAGGTCTAAGAATGGGATCGTGCTTGAACCTTGCAAGGGGCATCTGGTTAGGAAGTTTATAAAGGAATGCTGGAGGAAATGTGGATGTGACATGCAGTGTGGAAACCGGGTAGTGCAACGAGGTTTAAGATGTAAATTGCAGCTATTCTTGACTCGAGAAGGAAAGGGCTGGGGCCTTAGAACACTAGAAGATTTGCCCAAGGGATGCTTTGTATGTGAATATGCTGGGGAAATATTAACCAATACAGAATTATATGAAAGGACTATGCAGAATAGTGGCAATGACAGACATACATATCCTGTAACCCTTGATGCAGACTGGGGCTCAGAAGGGGTGTTAAAGGATGAGGAGGCACTATGCTTAGACGCAACATATAATGGAAATGTTGCAAGGTTTATCAATCATAGATGCATTGACGCAAATCTGATAGACATTCCTGTTGAAGTGGAGACTCCTGATCGCCACTATTATCATCTTGCCCTCTTTACCAACAGAGAAGTTAAAGCATATGAGGAGTTGACATGGGATTATGGTATTGACTTTGATGATCATGACCATCCTATTAAAGCATTTCAATGTTGTTGTGGAAGTGGCTTGTGCCGTGATAAGAAACAAAAAGGAACTAGATCAATGAAAACTAAAAAACTCAAGGTTAAGGAGACACATGCATCCAGGAGTAGAAGTTGA	2112	0.3868	MALNPRVTKAFDAMGALGISCEEVKPVLKNLLKVYNGKWELIEEDNYRTLIDSYFELKEDKLVESKRKAPITCHDEERPTHKLHLVDGGDQVSSKDCSRQALSVEDNAVPRKTIKQKISKPSQTSMGDMKPKTSSQALQTRLGEVEMISNLPCMAVTNRKLYPKKASSAVHCENPIDGPSSSHVQRRNLSSDHYQEVVTPKIKKPKLLLGPNSTSYRGPSHASNGNLCVKSLHQDMHKKDNNPACNNNTRTYKDGINIASSPFGEVKISLNCDAALGQPNFHIPNLDSVMRSMDEKYLSSCNTVESQLSMVKLLDDLCESYLKMGLNLNRNGSNLVYANSHNTACLPQQFTEDEKNSFHFLSDITKGSENVKISLLYEIGSEDLPKFNYIPYNIIYQSANVNISLARIADEGCCSDCSGNCLSLSFPCACAQETGGEFAYTPQGLLKEEFLTICMSMKNDPKDEHFVYCQECPLERSKNGIVLEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLRCKLQLFLTREGKGWGLRTLEDLPKGCFVCEYAGEILTNTELYERTMQNSGNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCIDANLIDIPVEVETPDRHYYHLALFTNREVKAYEELTWDYGIDFDDHDHPIKAFQCCCGSGLCRDKKQKGTRSMKTKKLKVKETHASRSRS	703

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3142g00022	703	SMART	preset_2	361	503	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Gabi3142g00022	703	MobiDBLite	consensus disorder prediction	683	703	-	-
	Gabi3142g00022	703	Pfam	Ubiquitin-binding WIYLD domain	6	59	IPR018848	-
	Gabi3142g00022	703	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	703	IPR025776	-
	Gabi3142g00022	703	Pfam	Pre-SET motif	364	511	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Gabi3142g00022	703	ProSiteProfiles	SET domain profile.	519	653	IPR001214	GO:0005515
	Gabi3142g00022	703	CDD	SET_SETDB-like	385	653	-	-
	Gabi3142g00022	703	Gene3D	-	1	60	IPR043017	-
	Gabi3142g00022	703	FunFam	SET-domain containing protein lysine methyltransferase family protein	364	678	-	-
	Gabi3142g00022	703	SUPERFAMILY	SET domain	371	676	IPR046341	-
	Gabi3142g00022	703	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	7	684	-	-
	Gabi3142g00022	703	MobiDBLite	consensus disorder prediction	683	697	-	-
	Gabi3142g00022	703	Gene3D	SET domain	340	665	IPR046341	-
	Gabi3142g00022	703	SMART	set_7	519	659	IPR001214	GO:0005515
	Gabi3142g00022	703	Pfam	SET domain	531	653	IPR001214	GO:0005515
	Gabi3142g00022	703	ProSiteProfiles	Pre-SET domain profile.	417	516	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3142g00022	Gabi-Chr3142	264358	274051	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3142g00022	495	676	C2H2 Transcription Factor Family	AT2G23740	40.642	1.31e-30	127

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Gabi3142g00022		Pre-SET	3.5e-17	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3142g00022	-		-	gsj:114402909	1065.83