Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3142g00018 ATGACTACTCTTAAAGAAGAGTGGGAAGCTGTTCTGGATGGCCTTGAAACTGAAAGTGCCCACTTACTGGAACAACTTGATGGGGCTGGAATCGAGCTCCCAAGCCTTTATAAGTGGATTGAAAGAGAAGCTCCCAATGGTTGTTGCACTGAAGCATGGAAAAGGAGGAATCATTGGATTGGGTCACAGGCAACTGCTGAAATTGCTGAGTCAATTGCTGATGCTGAGAAGTATCTACAAGTCAACAGACCTGTTAGAAGGCGACATGGTAAATTACTAGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAGCTTTCTCATGAAACTGAGGAGCCTGGGAAGAAAGAAACCCATGGTGATTGGGATCTGTTCAATAACATAGTTTCTGATGGGAGTGGCGTTGATGCTTCATTTGGAAGTAAGCATTGGGCTTCTGTTTATTTAGCCAGCACTCCACAGCAAGCCGCCCTGATGGGACTCAAATTTCCTGGAGTTGATGAGGTGGAGGAGATTGATGATGTTGATGGCAATTCTAGTGATCCATTTATTGCTGCTGCCATTGCAAATGAAAGAGAACTAGATCTTTCTGATGAGCAAAGGAGACAATTTAAAAGGGTCAAAGAAGAGGATGATGCAATTGTTGATAGGAAGCTTCAAATCCGTTTGAAACATAGGAGGCATCAAAAGAACAGTAAACAGCGAGAAATGTGCCCACCTGACCTGTTGGCGGAGAGCCACATACAGAAGCCTTCATCCGTTGATCATTCTAATCCTGCTATGAAGGAAGGAGCTGGTGATGATGGGATAATTATGTCTGATAATATGGAGACAGATGAAATTGAAGGTTTTGATGCCAGTTATCATCTTGCCAAAGAAAAGCCTATGAGTACTGGTGATGAACAGAGAGGAACTAAGCGTCTACATGATGGGGAGCTCGAACCTGATAATAAAAAGTATCGGACTGTTATCACTGACAGTGATGATGAAGCAGATGTCATTGAAGATAAGTTAGATTGCAATATGAATACCCTAGGGGATCAATCCAAGATAAAAGAAGGTTTATGTATCAGTGGTGCTGATTCTATTCCTTTGAAGTGTGTGGATGACAAGTTTTACTGCACTGTTTGTGATAAAGTGGCTCTTGAAGTGCACCCACACCCTTTCTTGAAAGTGATTATTTGTGGAGATTGCAATTGCTTAATGAAAGGAAAGATACATGCAAAGGACCTGGGTCATGATCATTCTGAGGGTTTCTGTGCATGGTGCGGAGGAAGCAGTGGATTAGTTAATTGCAAATCATGCAAGATACTATTCTGCACCAAATGTATAAAGAAGAATCTTGATGTAGAATTCATTTCTGAAGCTCAAACCACTTGCTGGCATTGTTGTTGTTGCCGTCCAAATCTTCTGGAAAGACTGTCATTGCAACTAGAGAAAGCTATGGGATCTGCTGATATACTAGTTTCCAGTTCTGGTAGTGATTCTTCAGATGATTCAGATGCAAAGATTAATGTTACAATCAGCTCTAAGCGAAAGCACAAAAAGAAGATTCGCCGGATACTTGATGATGCTGAATTAGGAGAAGAGACAAAAAGGAAAATAGCAATTGAAAAGGAACGTCAGGAGCGATTGAATTCTTTGCGAGTACAGTTTTCTGCCTCATCGATTAAGATGAGCTCTGCTGGCTTTATTGGGAATTTATCTGAAGGAGCAAGCATTGAAGTTCTTGGTGACGCACTGGCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTGAGAATTCCTCCTAGCATCTCAGCTAAACTGAAGGCCCACCAGATTGCTGGAATAAGATTTATGTGGGAAAATATAATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGGTGTATTTTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGGTGATAGCTTTATTGTACACTGCAATGAGAAGTGTTGATTTGGGGTTAAGAACTGTGCTTATAGTCACACCTGTCAATGTGCTGCATAATTGGCGGCAGGAGTTCATCAAGTGGAGACCTTCAGAATTAAAGCCACTCAGGGTCTCCATGCTGGAAGATGTATCAAGAGATAGGAGGGCAGAGTTGCTTGCGAAGTGGAGAGCTAAAGGTGGTGTCTTTTTGATTAGCTACTCTGCTTTCCGAAATTTGTCTTTTGGAAAGAATGTGAAAGATCGGCAGATGGCCAGAGAAATTTGCCATGCTTTACAGGACGGACCTGACATTCTCGTTTGTGATGAAGCCCACATGATAAAAAATACAAAGGCTGAGGTAACTCAAGCCTTGAAACAAGTAAAATGCCAGAGAAGAATTGCGCTTACTGGATCACCCCTTCAAAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTAGGAACCGCTTCCAAAATCCTATAGAGAATGGTCAACACACTAATTCAACTCTGACTGACGTGAAAATTATGAACCAAAGGTCTCATATCCTTTATGAACAGTTAAAAGGCTTTGTACAAAGAATGGACATGACTGTGGTGAAGAAGGATCTACCACCGAAAACTGTCTTTGTGATAACTGTCAAGCTTTCTCCCTTACAGAGAAAATTGTACAAGAGATTCCTTGATGTGCATGGGTTCACTAAGGACAGGGTGCATCATGAAAATTTAAGAAAGAGAAGTTTTTTTGCTGGGTACCAGGCACTAGCTCGGATATGGAACCACCCTGGGATCTTACAATTGACAAAAGAAGACAAGGACTATGTAAGACATGAAGATGCTGTTGAGAATTTTCTTGTGGATGATAGCTCCAGTGATGAAAATTCTGATTTTAATGTGCTTGCTGGAGAGAAGATGAAGTATGCAAATGATTTGCTGCAACGGAAAGATGATAATGGATTTTTCGTCAAGGGGTGGTGGAATGATCTTCTTCATGAAAAAATTTATAAAGAGGTTGAATACAGTGGCAAAATGGTTTTGCTGATAGACATACTAACCATGAGTTCTGATGTGGGCGATAAGGTGTTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTTATAGAACTTTATCTCTCAAGGATGCCTCGATGTGGCAAAAGAGGAAAGTTTTGGAAGAAGGGAAAAGATTGGTATAGGCTGGATGGAAGGACAGAGAGCTCTGAAAGGCAGAAGCTTGTTGAAAGATTTAACGAGTCTTCGAATAGGAGGGTAAAATGCACTCTTATTTCAACCAGAGCAGGCTCTCTGGGTATTAATCTTCATGCAGCTAACCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCTATCTATCGAGCTTGGAGGTATGGGCAGACAAAGCCTGTGTTTGCTTATCGATTGCTGGCGCATGGAACTATGGAAGAGAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTCGAGTGGTCGATAGACAACAGGTGCATAGGACCATATCTAAAGAAGAAATGTTACATCTCTTTGAGTTTGGTGATGATGAGAACCCTGAAACTTTGGCTGAGCTAAGTCAGGAAAATGGGCATACTTGTCATCAAAATAATCCAGTTTTGGTTGGGCATTCACTGAAGCATACAGCACCACATTCAAATGGGAGCAATTATTCTGATAAGTTAATGGAAAGCTTACTTAGCAAGCATCATCCACGGTGGATTGCCAATTATCATGAACATGAATCCCTGTTACAAGAAAATGAAGAGGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTGTATCGGAAATCGTTGGAATGGGAAGAAGTGCAGAGAGTACCACTCCGTGAGACCATGCCTGATCAAAAGCCAGAAATTCGGAATGCAAATGCTAAGCCCCATGTATCTGAAACCCGCAGCATCTCACCAAGTAAGCTAAGGAATCGTTTCGCGACGCGGAAATGCACCAACCTTGCGCACTTGTTGACGCTCAGAAGTCAGGGCACAAAATATGGTTGCAGTACAGTATGTGGTGAATGCGCCCAGCAGATAACGTGGGAAGACTTGAAGAATAGAGGTAAGAACGTAGCAAGGTGA 4137 0.4177 MTTLKEEWEAVLDGLETESAHLLEQLDGAGIELPSLYKWIEREAPNGCCTEAWKRRNHWIGSQATAEIAESIADAEKYLQVNRPVRRRHGKLLEEGASGFLQKKLSHETEEPGKKETHGDWDLFNNIVSDGSGVDASFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSSDPFIAAAIANERELDLSDEQRRQFKRVKEEDDAIVDRKLQIRLKHRRHQKNSKQREMCPPDLLAESHIQKPSSVDHSNPAMKEGAGDDGIIMSDNMETDEIEGFDASYHLAKEKPMSTGDEQRGTKRLHDGELEPDNKKYRTVITDSDDEADVIEDKLDCNMNTLGDQSKIKEGLCISGADSIPLKCVDDKFYCTVCDKVALEVHPHPFLKVIICGDCNCLMKGKIHAKDLGHDHSEGFCAWCGGSSGLVNCKSCKILFCTKCIKKNLDVEFISEAQTTCWHCCCCRPNLLERLSLQLEKAMGSADILVSSSGSDSSDDSDAKINVTISSKRKHKKKIRRILDDAELGEETKRKIAIEKERQERLNSLRVQFSASSIKMSSAGFIGNLSEGASIEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIALLYTAMRSVDLGLRTVLIVTPVNVLHNWRQEFIKWRPSELKPLRVSMLEDVSRDRRAELLAKWRAKGGVFLISYSAFRNLSFGKNVKDRQMAREICHALQDGPDILVCDEAHMIKNTKAEVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTKDRVHHENLRKRSFFAGYQALARIWNHPGILQLTKEDKDYVRHEDAVENFLVDDSSSDENSDFNVLAGEKMKYANDLLQRKDDNGFFVKGWWNDLLHEKIYKEVEYSGKMVLLIDILTMSSDVGDKVLVFSQSIPTLDLIELYLSRMPRCGKRGKFWKKGKDWYRLDGRTESSERQKLVERFNESSNRRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLAELSQENGHTCHQNNPVLVGHSLKHTAPHSNGSNYSDKLMESLLSKHHPRWIANYHEHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPLRETMPDQKPEIRNANAKPHVSETRSISPSKLRNRFATRKCTNLAHLLTLRSQGTKYGCSTVCGECAQQITWEDLKNRGKNVAR 1378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3142g00018 1378 CDD SF2_C_SNF 1003 1146 - -
Gabi3142g00018 1378 Coils Coil 5 25 - -
Gabi3142g00018 1378 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 628 811 IPR014001 -
Gabi3142g00018 1378 Pfam Helicase conserved C-terminal domain 1011 1135 IPR001650 -
Gabi3142g00018 1378 CDD ADDz_ATRX 369 467 - -
Gabi3142g00018 1378 Coils Coil 1254 1274 - -
Gabi3142g00018 1378 SMART ultradead3 602 823 IPR014001 -
Gabi3142g00018 1378 Pfam SNF2-related domain 628 930 IPR000330 GO:0005524|GO:0140658
Gabi3142g00018 1378 ProSiteProfiles ADD domain profile. 361 493 IPR025766 -
Gabi3142g00018 1378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 592 860 IPR027417 -
Gabi3142g00018 1378 MobiDBLite consensus disorder prediction 293 315 - -
Gabi3142g00018 1378 PANTHER RAD54-LIKE 1 1371 IPR044574 GO:0016887
Gabi3142g00018 1378 Gene3D - 871 1214 IPR027417 -
Gabi3142g00018 1378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 866 1204 IPR027417 -
Gabi3142g00018 1378 Gene3D - 579 860 IPR038718 -
Gabi3142g00018 1378 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1015 1183 IPR001650 -
Gabi3142g00018 1378 SMART helicmild6 1038 1135 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3142g00018 Gabi-Chr3142 202097 232915 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3142g00018 636 1188 RAD5 or RAD16-like Gene Family AT5G43530 24.961 5.15e-33 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi3142g00018 SNF2_N 7.9e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3142g00018 K10779 - gmx:100794911 2270.74