Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3142g00017 ATGGCTGGAAAAACTGACGATGAAGTGGTAGATATTGAGAGTGATTCTAGTGGTTCTTTCAATGACGATTCAGACGATGAAGGATCTCTGCCTCCTGAAATAGATGACAGCATGCATCTTGAGGAACCTTTGACCGAGGAGGAAATAGAAGACCTTATTTCTGAGTTGTTAGAAGTGGAGAGTAAGGCTGCAGAGGCCCAAGAAGCTCTTGAAGAGGAGTCTCTTGCCAAAGTGGAGAGTGAAGTTAGACAAGAATTGAAGCAAACTCTTCAGGGGGATGATTTGGAAAGTGCTGTTGCTGATGAGATGACTACTCTTAAAGAAGAGTGGGAAGCTGTTCTGGATGGCCTTGAAACTGAAAGTGCCCACTTACTGGAACAACTTGATGGGGCTGGAATCGAGCTCCCAAGCCTTTATAAGTGGATTGAAAGAGAAGCTCCCAATGGTTGTTGCACTGAAGCATGGAAAAGGAGGAATCATTGGATTGGGTCACAGGCAACTGCTGAAATTGCTGAGTCAATTGCTGATGCTGAGAAGTATCTACAAGTCAACAGACCTGTTAGAAGGCGACATGGTAAATTACTAGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAGCTTTCTCATGAAACTGAGGAGCCTGGGAAGAAAGAAACCCATGGTGATTGGGATCTGTTCAATAACATAGTTTCTGATGGGAGTGGCGTTGATGCTTCATTTGGAAGTAAGCATTGGGCTTCTGTTTATTTAGCCAGCACTCCACAGCAAGCCGCCCTGATGGGACTCAAATTTCCTGGAGTTGATGAGGTGGAGGAGATTGATGATGTTGATGGCAATTCTAGTGATCCATTTATTGCTGCTGCCATTGCAAATGAAAGAGAACTAGATCTTTCTGATGAGCAAAGGAGACAATTTAAAAGGGTCAAAGAAGAGGATGATGCAATTGTTGATAGGAAGCTTCAAATCCGTTTGAAACATAGGAGGCATCAAAAGAACAGTAAACAGCGAGAAATGTGCCCACCTGACCTGTTGGCGGAGAGCCACATACAGAAGCCTTCATCCGTTGATCATTCTAATCCTGCTATGAAGGAAGGAGCTGGTGATGATGGGATAATTATGTCTGATAATATGGAGACAGATGAAATTGAAGGTTTTGATGCCAGTTATCATCTTGCCAAAGAAAAGCCTATGAGTACTGGTGATGAACAGAGAGGAACTAAGCGTCTACATGATGGGGAGCTCGAACCTGATAATAAAAAGTATCGGACTGTTATCACTGACAGTGATGATGAAGCAGATGTCATTGAAGATAAGTTAGATTGCAATATGAATACCCTAGGGGATCAATCCAAGATAAAAGAAGGTTTATGTATCAGTGGTGCTGATTCTATTCCTTTGAAGTGTGTGGATGACAAGTTTTACTGCACTGTTTGTGATAAAGTGGCTCTTGAAGTGCACCCACACCCTTTCTTGAAAGTGATTATTTGTGGAGATTGCAATTGCTTAATGAAAGGAAAGATACATGCAAAGGACCTGGGTCATGATCATTCTGAGGGTTTCTGTGCATGGTGCGGAGGAAGCAGTGGATTAGTTAATTGCAAATCATGCAAGATACTATTCTGCACCAAATGTATAAAGAAGAATCTTGATGTAGAATTCATTTCTGAAGCTCAAACCACTTGCTGGCATTGTTGTTGTTGCCGTCCAAATCTTCTGGAAAGACTGTCATTGCAACTAGAGAAAGCTATGGGATCTGCTGATATACTAGTTTCCAGTTCTGGTAGTGATTCTTCAGATGATTCAGATGCAAAGATTAATGTTACAATCAGCTCTAAGCGAAAGCACAAAAAGAAGATTCGCCGGATACTTGATGATGCTGAATTAGGAGAAGAGACAAAAAGGAAAATAGCAATTGAAAAGGAACGTCAGGAGCGATTGAATTCTTTGCGAGTACAGTTTTCTGCCTCATCGATTAAGATGAGCTCTGCTGGCTTTATTGGGAATTTATCTGAAGGAGCAAGCATTGAAGTTCTTGGTGACGCACTGGCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTGAGAATTCCTCCTAGCATCTCAGCTAAACTGAAGGCCCACCAGATTGCTGGAATAAGATTTATGTGGGAAAATATAATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGGTGTATTTTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGGTGATAGCTTTATTGTACACTGCAATGAGAAGTGTTGATTTGGGGTTAAGAACTGTGCTTATAGTCACACCTGTCAATGTGCTGCATAATTGGCGGCAGGAGTTCATCAAGTGGAGACCTTCAGAATTAAAGCCACTCAGGGTCTCCATGCTGGAAGATGTATCAAGAGATAGGAGGGCAGAGTTGCTTGCGAAGTGGAGAGCTAAAGGTGGTGTCTTTTTGATTAGCTACTCTGCTTTCCGAAATTTGTCTTTTGGAAAGAATGTGAAAGATCGGCAGATGGCCAGAGAAATTTGCCATGCTTTACAGGACGGACCTGACATTCTCGTTTGTGATGAAGCCCACATGATAAAAAATACAAAGGCTGAGGTAACTCAAGCCTTGAAACAAGTAAAATGCCAGAGAAGAATTGCGCTTACTGGATCACCCCTTCAAAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTAGGAACCGCTTCCAAAATCCTATAGAGAATGGTCAACACACTAATTCAACTCTGACTGACGTGAAAATTATGAACCAAAGGTCTCATATCCTTTATGAACAGTTAAAAGGCTTTGTACAAAGAATGGACATGACTGTGGTGAAGAAGGATCTACCACCGAAAACTGTCTTTGTGATAACTGTCAAGCTTTCTCCCTTACAGAGAAAATTGTACAAGAGATTCCTTGATGTGCATGGGTTCACTAAGGACAGGGTGCATCATGAAAATTTAAGAAAGAGAAGTTTTTTTGCTGGGTACCAGGCACTAGCTCGGATATGGAACCACCCTGGGATCTTACAATTGACAAAAGAAGACAAGGACTATGTAAGACATGAAGATGCTGTTGAGAATTTTCTTGTGGATGATAGCTCCAGTGATGAAAATTCTGATTTTAATGTGCTTGCTGGAGAGAAGATGAAGTATGCAAATGATTTGCTGCAACGGAAAGATGATAATGGATTTTTCGTCAAGGGGTGGTGGAATGATCTTCTTCATGAAAAAATTTATAAAGAGGTTGAATACAGTGGCAAAATGGTTTTGCTGATAGACATACTAACCATGAGTTCTGATGTGGGCGATAAGGTGTTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTTATAGAACTTTATCTCTCAAGGATGCCTCGATGTGGCAAAAGAGGAAAGTTTTGGAAGAAGGGAAAAGATTGGTATAGGCTGGATGGAAGGACAGAGAGCTCTGAAAGGCAGAAGCTTGTTGAAAGATTTAACGAGTCTTCGAATAGGAGGGTAAAATGCACTCTTATTTCAACCAGAGCAGGCTCTCTGGGTATTAATCTTCATGCAGCTAACCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCTATCTATCGAGCTTGGAGGTATGGGCAGACAAAGCCTGTGTTTGCTTATCGATTGCTGGCGCATGGAACTATGGAAGAGAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTCGAGTGGTCGATAGACAACAGGTGCATAGGACCATATCTAAAGAAGAAATGTTACATCTCTTTGAGTTTGGTGATGATGAGAACCCTGAAACTTTGGCTGAGCTAAGTCAGGAAAATGGGCATACTTGTCATCAAAATAATCCAGTTTTGGTTGGGCATTCACTGAAGCATACAGCACCACATTCAAATGGGAGCAATTATTCTGATAAGTTAATGGAAAGCTTACTTAGCAAGCATCATCCACGGTGGATTGCCAATTATCATGAACATGAATCCCTGTTACAAGAAAATGAAGAGGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTGTATCGGAAATCGTTGGAATGGGAAGAAGTGCAGAGAGTACCACTCCGTGAGACCATGCCTGATCAAAAGCCAGAAATTCGGAATGCAAATGCTAAGCCCCATGTATCTGAAACCCGCAGCATCTCACCAAGTAAGCTAAGGAATCGTTTCGCGACGCGGAAATGCACCAACCTTGCGCACTTGTTGACGCTCAGAAGTCAGGGCACAAAATATGGTTGCAGTACAGTATGTGGTGAATGCGCCCAGCAGATAACGTGGGAAGACTTGAAGAATAGAGGTAAGAACGTAGCAAGGTGA 4443 0.4193 MAGKTDDEVVDIESDSSGSFNDDSDDEGSLPPEIDDSMHLEEPLTEEEIEDLISELLEVESKAAEAQEALEEESLAKVESEVRQELKQTLQGDDLESAVADEMTTLKEEWEAVLDGLETESAHLLEQLDGAGIELPSLYKWIEREAPNGCCTEAWKRRNHWIGSQATAEIAESIADAEKYLQVNRPVRRRHGKLLEEGASGFLQKKLSHETEEPGKKETHGDWDLFNNIVSDGSGVDASFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSSDPFIAAAIANERELDLSDEQRRQFKRVKEEDDAIVDRKLQIRLKHRRHQKNSKQREMCPPDLLAESHIQKPSSVDHSNPAMKEGAGDDGIIMSDNMETDEIEGFDASYHLAKEKPMSTGDEQRGTKRLHDGELEPDNKKYRTVITDSDDEADVIEDKLDCNMNTLGDQSKIKEGLCISGADSIPLKCVDDKFYCTVCDKVALEVHPHPFLKVIICGDCNCLMKGKIHAKDLGHDHSEGFCAWCGGSSGLVNCKSCKILFCTKCIKKNLDVEFISEAQTTCWHCCCCRPNLLERLSLQLEKAMGSADILVSSSGSDSSDDSDAKINVTISSKRKHKKKIRRILDDAELGEETKRKIAIEKERQERLNSLRVQFSASSIKMSSAGFIGNLSEGASIEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIALLYTAMRSVDLGLRTVLIVTPVNVLHNWRQEFIKWRPSELKPLRVSMLEDVSRDRRAELLAKWRAKGGVFLISYSAFRNLSFGKNVKDRQMAREICHALQDGPDILVCDEAHMIKNTKAEVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTKDRVHHENLRKRSFFAGYQALARIWNHPGILQLTKEDKDYVRHEDAVENFLVDDSSSDENSDFNVLAGEKMKYANDLLQRKDDNGFFVKGWWNDLLHEKIYKEVEYSGKMVLLIDILTMSSDVGDKVLVFSQSIPTLDLIELYLSRMPRCGKRGKFWKKGKDWYRLDGRTESSERQKLVERFNESSNRRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLAELSQENGHTCHQNNPVLVGHSLKHTAPHSNGSNYSDKLMESLLSKHHPRWIANYHEHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPLRETMPDQKPEIRNANAKPHVSETRSISPSKLRNRFATRKCTNLAHLLTLRSQGTKYGCSTVCGECAQQITWEDLKNRGKNVAR 1480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3142g00017 1480 Coils Coil 1356 1376 - -
Gabi3142g00017 1480 PANTHER RAD54-LIKE 17 1473 IPR044574 GO:0016887
Gabi3142g00017 1480 Coils Coil 100 127 - -
Gabi3142g00017 1480 MobiDBLite consensus disorder prediction 395 414 - -
Gabi3142g00017 1480 SMART ultradead3 704 925 IPR014001 -
Gabi3142g00017 1480 ProSiteProfiles ADD domain profile. 463 595 IPR025766 -
Gabi3142g00017 1480 SMART helicmild6 1140 1237 IPR001650 -
Gabi3142g00017 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 968 1306 IPR027417 -
Gabi3142g00017 1480 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 730 913 IPR014001 -
Gabi3142g00017 1480 Pfam SNF2-related domain 730 1032 IPR000330 GO:0005524|GO:0140658
Gabi3142g00017 1480 MobiDBLite consensus disorder prediction 1 41 - -
Gabi3142g00017 1480 CDD SF2_C_SNF 1105 1248 - -
Gabi3142g00017 1480 Coils Coil 49 76 - -
Gabi3142g00017 1480 Gene3D - 973 1316 IPR027417 -
Gabi3142g00017 1480 Pfam Helicase conserved C-terminal domain 1113 1237 IPR001650 -
Gabi3142g00017 1480 CDD ADDz_ATRX 471 569 - -
Gabi3142g00017 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 694 962 IPR027417 -
Gabi3142g00017 1480 Gene3D - 681 962 IPR038718 -
Gabi3142g00017 1480 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1117 1285 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3142g00017 Gabi-Chr3142 197468 232915 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3142g00017 738 1290 RAD5 or RAD16-like Gene Family AT5G43530 24.961 3.30e-33 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi3142g00017 SNF2_N 9e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3142g00017 K10779 - gmx:100794911 2410.56