Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3142g00008 ATGGAAGCTGCTCCTGGTGGAGTGGATGATATGACTAAGCTGTCCTATTTGCACGAGCCTGGAGTCCTGCAGAACTTAAAAATTAGATATGAATTGAATGAAATATACACTTATACTGGAAACATTCTGATTGCAATAAATCCGTTCCAAAGACTACCTCATATTTATGGTGCACACATGATGCAACAATACAAGGGAGCACCATTTGGAGAATTAAGCCCTCATGTATTTGCAGTTGCTGATGTTGCATATAGGGCTATGGTTAACGAAGGAAGAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAATACCTTGCTTTCTTAGGTGGTAGGGCTGCTACTGAAGGACGAACAGTTGAACAACAAGTTCTTGAATCAAATCCCGTTCTGGAAGCATTTGGCAATGCTAAAACTGTCAGGAACAACAATTCTAGTCGTTTCGGTAAATTTGTTGAAATCCAATTTGATAAGAGTGGAAGAATCTCCGGAGCAGCCATCCGAACATACCTTCTAGAGAGATCTCGGGTTTGCCAAGTTAATGATCCTGAACGGAACTACCACTGCTTTTATCTTCTTTGTGCTGCACCACAGGAGGAAATTGAAAAATACAAATTAGGAAATCCTAGATCATTTCACTACCTTAACCAGTCAAAATGCTATGAACTGGCTGATGTAAGTGATGCTCGTGAGTATCTTGCCACCCGGAGAGCTATGGATATTGTTGGAATAAGTCAAAAAGATCAGGAAGCCATTTTTAGAGTTGTTGCTTCAATTCTTCATATTGGTAATATTGAATTTGCCAAAGGAAAGGAAGTTGACTCATCAGTTCCAAAAGATGACAAAGACAAATTCCACCTGAAAACAACTGCTGAGCTTCTCATGTGTGATGCTGATGCCTTGGAGGATGCATTGTGTAAGCGTGTCATGATCACTCCTGAAGAAGTTATAAAACGAAGCCTTGATCCCCAAAGTGCGACAGTCAGTAGAGATGGATTGGCAAAAACAATTTATTCCCGGCTATTTGACTGGTTGGTGGATAAGATTAATAATTCAATTGGACAAGACCCAAATTCTAAATCTTTGATTGGGGTTCTTGATATCTATGGTTTTGAAAGCTTTAAATCTAACAGTTTCGAACAGTTTTGCATTAATTTCACAAATGAGAAGCTGCAACAACATTTCAATCAGCACGTATTTAAAATGGAACAAGAAGAATATACGAAGGAGCAGATTGATTGGAGCTACATTGAATTTGTTGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACCTGGAGGAATCGTTGCTCTCCTTGACGAAGCTTGCATGTTTCCAAAGTCAACACATGAAACATTTGCAAACAAGCTTTATCAAACATTTAAGACTAACAAGCGCTTCATTAAGCCGAAATTGTCTCGAACGGATTTCACCATTTCTCATTATGCTGGAGAGGTGACATACCAGTCTGAACAATTTTTAGACAAAAACAAGGATTATGTGGTTCCTGAACATCAAGATTTATTGAGTGCTTCCAAATGTCCTTTTGTAGCTGGCCTTTTTCCACCACTTCCGGAAGAGACATCAAAATCTTCCAAATTTTCTTCAATTGGTTCTCGTTTTAAGCTACAACTACAGCAACTAATGGAAACATTAAATTCTACAGAACCGCATTACATTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCAATTTTTGAGAATGTTAATATTATGCAACAACTTCGCTGTGGTGGTGTTTTAGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACTCGCCGTGCTTTCTTTGAATTTGTGAACAGATTTGGCGTCCTTGCCCCAGAGGCTATGGAAGCAAATTGTGATGAAAAGACTGGTTGTCAAAAGATTCTCGAAAAAATAGGGCTTAAAGGTTATCAGATTGGAAAAACAAAGGTATTCTTGAGAGCAGGTCAGATGGCTGAACTAGATGCACGGAGAGCTCAAGTACTTAGTAATGCAGCAAAAATTATCCAATGGCGCGTACGAGCCCATCAAACTCGTAAACATTATCTTATGTTGCGAAAGAAGGCCATATATGTGCAGTCTCGATGGAGAGGAAGACTTGCATGCAAAGTCTATGAGAACATGAGAAGGGAGGCCGCTTCTATGAAAATTCAAAAGAACGTACGAAGATATGAAGCTAGGAAAGCCTATAAAGAACTTCACGTGTCAGCACTTAAATTGCAAACAGCTTTAAGGGCAATCGCTGCCCTCAAGGAGTTCAGATTTAGGAAGCAGACTAAGGCTTCTATCATTATTCAGGCTCGGTGGCGATGCCACAAAGCTGCCATATATTATAAAAGGCTCAAGAAAGGTTCACTAGTTGCACAATGCAGATGGAGGGGACGTGTAGCCAGGAAAGAACTTAGGAAACTGAAAATGGCTGCAAGAGAAACTGGTGCACTTCAAGAAGCAAAAGATAAGCTTGAAAAACGAGTGGAGGAACTCACTTGGCGTCTTCAACTAGAAAAAGGTTTAAGGACCAATCTAGAAGAATCCAAAGCACAGGAGATAGCAAAACTACAGAATTCATTGCAGGAGATGCAGAACAAAGTTGATGAAACCATATTGCAAAAAAAAAAAGTTGATGAAACCAATGCTATGCTCATCAAGGAGCGAGAAAACGCAAATAAAGCTATTGAAGAAGCAGCTCCTGTTATTAAAGAAACGCAGGTTCTTGTTGAAGATACGCAGAAGATTGAGACACTGACTGCGGAAGTTGAGAGCCTCAAGACTTCACTCGAGTCAGAGAAACAGAAAGCTGATGACTTTGAAAGAAAATATAATGAAGCCCTAGTTTGGAGTGAAGAAAGAGGTAAAAAATTAGAAGACACAGAGAAAAAAGTTCGTCAGCTGCAAGAATCATTGACCAGGCTAGAAGAGAAGATTACTAATTTAGAATCAGAGAATCAGGTTCTACGTCAACAAGCAGTATCCATGGCACCTAATAAGTTCCTTTCAGGACGCTCCAGATCAATTATGCAGGTACTCCTCATTGCTGAAAGTGGTCATATTGCAGTGGAAGCAAAGACACCTTTGGAACTGCATAGTCCATCAATGAACCAGAGGGAATCCTCTGAAGTGGAAGACAAACCACAGAAGTCACTAAATGAGAAACAACAGGAGAATCAAGAGTTACTCATTAGATGTATTGCACAACATCTAGGCTTTGCTGGGAACAGACCAATTGCTGCCTGTATCATATACAAATGCCTATTGCATTGGAGATCATTTGAAGTTGAGCGGACTAGCGTTTTTGATCGAATCATCCAAACTTTTGGCCATGCAATTGAGACCCAGGATAACAATGATGTCTTGGCTTATTGGTTATCCAATACCTCAACACTTCTCTTGTTACTCCAGCGCACACTCAAGGCAAGTGGTGCTGCTGGAATGGCTCCACAGCGCCGTCGTTCTTCATCAGCAACCCTGTTTGGGAGGATGACTCAGAGTTTCCGTGGAACGCCAGCTGGAGTCAATCTTTCCCTAATCAATGGTAGCACAAGCAGAGGAGTAGATACATTAAGACAAGTTGAAGCCAAGTACCCAGCTCTGCTTTTCAAACAGCAGCTTACAGCATATGTGGAAAAGATATATGGAATGATTCGTGATAACTTGAAGAAAGAAATTTCTCCCTTGCTTGGATTATGCATCCAGGCACCGAGAACATCTAGAGCAAGCATGGTTAAGGGATCATCACGTTCTCCTGCAAACACAGAAGCCCAGCGTGCTTTGATTGCTCACTGGCAGGGGATAGTGAAGAGCTTAGGGAACTTTTTACATACTTTGAAAGCAAATCATGTTCCCCCATTTTTGGTTCGTAAGGTGTTCACACAAATTTTTTCTTTCATCAATGTACAATTATTCAATAGTCTTCTTTTAAGACGGGAATGCTGCTCATTTAGTAATGGAGAATATGTCAAAGCTGGTTTGGCTGAATTAGAGCACTGGTGTTATAAGGCAACGGATGAGTATGCAGGTTCAGCCTGGGATGAGCTCAAACACATTAGACAGGCTATTGGATTTCTGGTCATACATCAGAAACCAAAGAAAACGCTGGATGAAATAAGTCATGATCTGTGCCCAGTCCTTAGTATACAGCAGCTATATCGGATTAGCACCATGTACTGGGATGACAAATATGGAACGCATAGTGTGTCCTCTGATGTCATATCCAATATGAGAGTGTTGATGACTGAAGATTCAAATAACGCAGTTAGTAATTCTTTCCTGTTGGATGATGATTCAAGCATTCCGTTTTCTGTTGATGACATATCGAAGTCAATGGAACAGATGGATATTTCAGATATAGAGCCCCCACCACTAATTCGTGAAAACTCTGGCTTTAGCTTTTTATTGCCGCGTCCAGATTGA 4461 0.4053 MEAAPGGVDDMTKLSYLHEPGVLQNLKIRYELNEIYTYTGNILIAINPFQRLPHIYGAHMMQQYKGAPFGELSPHVFAVADVAYRAMVNEGRSNSILVSGESGAGKTETTKMLMQYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQVNDPERNYHCFYLLCAAPQEEIEKYKLGNPRSFHYLNQSKCYELADVSDAREYLATRRAMDIVGISQKDQEAIFRVVASILHIGNIEFAKGKEVDSSVPKDDKDKFHLKTTAELLMCDADALEDALCKRVMITPEEVIKRSLDPQSATVSRDGLAKTIYSRLFDWLVDKINNSIGQDPNSKSLIGVLDIYGFESFKSNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQIDWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQTFKTNKRFIKPKLSRTDFTISHYAGEVTYQSEQFLDKNKDYVVPEHQDLLSASKCPFVAGLFPPLPEETSKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFVNRFGVLAPEAMEANCDEKTGCQKILEKIGLKGYQIGKTKVFLRAGQMAELDARRAQVLSNAAKIIQWRVRAHQTRKHYLMLRKKAIYVQSRWRGRLACKVYENMRREAASMKIQKNVRRYEARKAYKELHVSALKLQTALRAIAALKEFRFRKQTKASIIIQARWRCHKAAIYYKRLKKGSLVAQCRWRGRVARKELRKLKMAARETGALQEAKDKLEKRVEELTWRLQLEKGLRTNLEESKAQEIAKLQNSLQEMQNKVDETILQKKKVDETNAMLIKERENANKAIEEAAPVIKETQVLVEDTQKIETLTAEVESLKTSLESEKQKADDFERKYNEALVWSEERGKKLEDTEKKVRQLQESLTRLEEKITNLESENQVLRQQAVSMAPNKFLSGRSRSIMQVLLIAESGHIAVEAKTPLELHSPSMNQRESSEVEDKPQKSLNEKQQENQELLIRCIAQHLGFAGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTFGHAIETQDNNDVLAYWLSNTSTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGTPAGVNLSLINGSTSRGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASMVKGSSRSPANTEAQRALIAHWQGIVKSLGNFLHTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSSDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDISKSMEQMDISDIEPPPLIRENSGFSFLLPRPD 1486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3142g00008 1486 FunFam Myosin heavy chain 196 251 - -
Gabi3142g00008 1486 ProSiteProfiles Dilute domain profile. 1116 1429 IPR002710 -
Gabi3142g00008 1486 CDD MYSc_Myo11 20 664 IPR036018 -
Gabi3142g00008 1486 Gene3D Myosin VI head, motor domain, U50 subdomain 256 545 - -
Gabi3142g00008 1486 FunFam Class V myosin 383 521 - -
Gabi3142g00008 1486 CDD MyosinXI_CBD 1067 1452 IPR037975 GO:0007015
Gabi3142g00008 1486 Gene3D - 611 674 - -
Gabi3142g00008 1486 SMART DIL_2 1304 1411 IPR002710 -
Gabi3142g00008 1486 Pfam IQ calmodulin-binding motif 729 748 IPR000048 GO:0005515
Gabi3142g00008 1486 Pfam IQ calmodulin-binding motif 776 795 IPR000048 GO:0005515
Gabi3142g00008 1486 Pfam IQ calmodulin-binding motif 681 699 IPR000048 GO:0005515
Gabi3142g00008 1486 Gene3D Kinesin motor domain 9 606 IPR036961 -
Gabi3142g00008 1486 PANTHER MYOSIN 5 1417 - -
Gabi3142g00008 1486 PRINTS Myosin heavy chain signature 373 401 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3142g00008 1486 PRINTS Myosin heavy chain signature 36 55 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3142g00008 1486 PRINTS Myosin heavy chain signature 426 454 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3142g00008 1486 PRINTS Myosin heavy chain signature 140 167 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3142g00008 1486 PRINTS Myosin heavy chain signature 93 118 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3142g00008 1486 Gene3D - 729 776 - -
Gabi3142g00008 1486 Gene3D - 678 728 - -
Gabi3142g00008 1486 Gene3D - 777 826 - -
Gabi3142g00008 1486 ProSiteProfiles IQ motif profile. 798 827 IPR000048 GO:0005515
Gabi3142g00008 1486 Pfam Myosin head (motor domain) 8 664 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3142g00008 1486 MobiDBLite consensus disorder prediction 1052 1067 - -
Gabi3142g00008 1486 FunFam Myosin 2 256 371 - -
Gabi3142g00008 1486 Coils Coil 821 848 - -
Gabi3142g00008 1486 ProSiteProfiles Myosin motor domain profile. 6 676 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3142g00008 1486 SMART MYSc_2a 1 677 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3142g00008 1486 ProSiteProfiles IQ motif profile. 679 705 IPR000048 GO:0005515
Gabi3142g00008 1486 Coils Coil 964 1005 - -
Gabi3142g00008 1486 Gene3D - 383 567 - -
Gabi3142g00008 1486 FunFam unconventional myosin-Va 777 825 - -
Gabi3142g00008 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 729 IPR027417 -
Gabi3142g00008 1486 ProSiteProfiles IQ motif profile. 775 802 IPR000048 GO:0005515
Gabi3142g00008 1486 ProSiteProfiles IQ motif profile. 727 756 IPR000048 GO:0005515
Gabi3142g00008 1486 Coils Coil 922 956 - -
Gabi3142g00008 1486 ProSiteProfiles IQ motif profile. 702 731 IPR000048 GO:0005515
Gabi3142g00008 1486 SMART iq_5 774 796 IPR000048 GO:0005515
Gabi3142g00008 1486 SMART iq_5 797 819 IPR000048 GO:0005515
Gabi3142g00008 1486 SMART iq_5 726 748 IPR000048 GO:0005515
Gabi3142g00008 1486 SMART iq_5 749 771 IPR000048 GO:0005515
Gabi3142g00008 1486 SMART iq_5 701 723 IPR000048 GO:0005515
Gabi3142g00008 1486 SMART iq_5 678 700 IPR000048 GO:0005515
Gabi3142g00008 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 730 827 IPR027417 -
Gabi3142g00008 1486 Gene3D - 196 254 - -
Gabi3142g00008 1486 Pfam DIL domain 1305 1408 IPR002710 -
Gabi3142g00008 1486 MobiDBLite consensus disorder prediction 1042 1068 - -
Gabi3142g00008 1486 Coils Coil 860 911 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3142g00008 Gabi-Chr3142 92422 106428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3142g00008 1 1486 Myosins gene family AT1G54560 83.109 0.0 2597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3142g00008 K10357 - gmx:100816792 2706.4