Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3142g00007 ATGGGGACTCCAGTGAATATCATTGTGGGTTCTCATGTCTGGATTGAAGACCCAGACGTATCTTGGATTGATGGACAGGTATTAAAAATCAATGGAAAGGATGCTGAAATTGAAACTACCAATGGCAAAAAGGTTGTTGCAAATTTATTAAAAATATTTCCCAAGGATATGGAAGCTGCTCCTGGTGGAGTGGATGATATGACTAAGCTGTCCTATTTGCACGAGCCTGGAGTCCTGCAGAACTTAAAAATTAGATATGAATTGAATGAAATATACACTTATACTGGAAACATTCTGATTGCAATAAATCCGTTCCAAAGACTACCTCATATTTATGGTGCACACATGATGCAACAATACAAGGGAGCACCATTTGGAGAATTAAGCCCTCATGTATTTGCAGTTGCTGATGTTGCATATAGGGCTATGGTTAACGAAGGAAGAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAATACCTTGCTTTCTTAGGTGGTAGGGCTGCTACTGAAGGACGAACAGTTGAACAACAAGTTCTTGAATCAAATCCCGTTCTGGAAGCATTTGGCAATGCTAAAACTGTCAGGAACAACAATTCTAGTCGTTTCGGTAAATTTGTTGAAATCCAATTTGATAAGAGTGGAAGAATCTCCGGAGCAGCCATCCGAACATACCTTCTAGAGAGATCTCGGGTTTGCCAAGTTAATGATCCTGAACGGAACTACCACTGCTTTTATCTTCTTTGTGCTGCACCACAGGAGGAAATTGAAAAATACAAATTAGGAAATCCTAGATCATTTCACTACCTTAACCAGTCAAAATGCTATGAACTGGCTGATGTAAGTGATGCTCGTGAGTATCTTGCCACCCGGAGAGCTATGGATATTGTTGGAATAAGTCAAAAAGATCAGGAAGCCATTTTTAGAGTTGTTGCTTCAATTCTTCATATTGGTAATATTGAATTTGCCAAAGGAAAGGAAGTTGACTCATCAGTTCCAAAAGATGACAAAGACAAATTCCACCTGAAAACAACTGCTGAGCTTCTCATGTGTGATGCTGATGCCTTGGAGGATGCATTGTGTAAGCGTGTCATGATCACTCCTGAAGAAGTTATAAAACGAAGCCTTGATCCCCAAAGTGCGACAGTCAGTAGAGATGGATTGGCAAAAACAATTTATTCCCGGCTATTTGACTGGTTGGTGGATAAGATTAATAATTCAATTGGACAAGACCCAAATTCTAAATCTTTGATTGGGGTTCTTGATATCTATGGTTTTGAAAGCTTTAAATCTAACAGTTTCGAACAGTTTTGCATTAATTTCACAAATGAGAAGCTGCAACAACATTTCAATCAGCACGTATTTAAAATGGAACAAGAAGAATATACGAAGGAGCAGATTGATTGGAGCTACATTGAATTTGTTGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACCTGGAGGAATCGTTGCTCTCCTTGACGAAGCTTGCATGTTTCCAAAGTCAACACATGAAACATTTGCAAACAAGCTTTATCAAACATTTAAGACTAACAAGCGCTTCATTAAGCCGAAATTGTCTCGAACGGATTTCACCATTTCTCATTATGCTGGAGAGGTGACATACCAGTCTGAACAATTTTTAGACAAAAACAAGGATTATGTGGTTCCTGAACATCAAGATTTATTGAGTGCTTCCAAATGTCCTTTTGTAGCTGGCCTTTTTCCACCACTTCCGGAAGAGACATCAAAATCTTCCAAATTTTCTTCAATTGGTTCTCGTTTTAAGCTACAACTACAGCAACTAATGGAAACATTAAATTCTACAGAACCGCATTACATTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCAATTTTTGAGAATGTTAATATTATGCAACAACTTCGCTGTGGTGGTGTTTTAGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACTCGCCGTGCTTTCTTTGAATTTGTGAACAGATTTGGCGTCCTTGCCCCAGAGGCTATGGAAGCAAATTGTGATGAAAAGACTGGTTGTCAAAAGATTCTCGAAAAAATAGGGCTTAAAGGTTATCAGATTGGAAAAACAAAGGTATTCTTGAGAGCAGGTCAGATGGCTGAACTAGATGCACGGAGAGCTCAAGTACTTAGTAATGCAGCAAAAATTATCCAATGGCGCGTACGAGCCCATCAAACTCGTAAACATTATCTTATGTTGCGAAAGAAGGCCATATATGTGCAGTCTCGATGGAGAGGAAGACTTGCATGCAAAGTCTATGAGAACATGAGAAGGGAGGCCGCTTCTATGAAAATTCAAAAGAACGTACGAAGATATGAAGCTAGGAAAGCCTATAAAGAACTTCACGTGTCAGCACTTAAATTGCAAACAGCTTTAAGGGCAATCGCTGCCCTCAAGGAGTTCAGATTTAGGAAGCAGACTAAGGCTTCTATCATTATTCAGGCTCGGTGGCGATGCCACAAAGCTGCCATATATTATAAAAGGCTCAAGAAAGGTTCACTAGTTGCACAATGCAGATGGAGGGGACGTGTAGCCAGGAAAGAACTTAGGAAACTGAAAATGGCTGCAAGAGAAACTGGTGCACTTCAAGAAGCAAAAGATAAGCTTGAAAAACGAGTGGAGGAACTCACTTGGCGTCTTCAACTAGAAAAAGGTTTAAGGACCAATCTAGAAGAATCCAAAGCACAGGAGATAGCAAAACTACAGAATTCATTGCAGGAGATGCAGAACAAAGTTGATGAAACCATATTGCAAAAAAAAAAAGTTGATGAAACCAATGCTATGCTCATCAAGGAGCGAGAAAACGCAAATAAAGCTATTGAAGAAGCAGCTCCTGTTATTAAAGAAACGCAGGTTCTTGTTGAAGATACGCAGAAGATTGAGACACTGACTGCGGAAGTTGAGAGCCTCAAGACTTCACTCGAGTCAGAGAAACAGAAAGCTGATGACTTTGAAAGAAAATATAATGAAGCCCTAGTTTGGAGTGAAGAAAGAGGTAAAAAATTAGAAGACACAGAGAAAAAAGTTCGTCAGCTGCAAGAATCATTGACCAGGCTAGAAGAGAAGATTACTAATTTAGAATCAGAGAATCAGGTTCTACGTCAACAAGCAGTATCCATGGCACCTAATAAGTTCCTTTCAGGACGCTCCAGATCAATTATGCAGAGAGGTGCTGAAAGTGGTCATATTGCAGTGGAAGCAAAGACACCTTTGACTAATCAGGAACTGCATAGTCCATCAATGAACCAGAGGGAATCCTCTGAAGTGGAAGACAAACCACAGAAGTCACTAAATGAGAAACAACAGGAGAATCAAGAGTTACTCATTAGATGTATTGCACAACATCTAGGCTTTGCTGGGAACAGACCAATTGCTGCCTGTATCATATACAAATGCCTATTGCATTGGAGATCATTTGAAGTTGAGCGGACTAGCGTTTTTGATCGAATCATCCAAACTTTTGGCCATGCAATTGAGACCCAGGATAACAATGATGTCTTGGCTTATTGGTTATCCAATACCTCAACACTTCTCTTGTTACTCCAGCGCACACTCAAGGCAAGTGGTGCTGCTGGAATGGCTCCACAGCGCCGTCGTTCTTCATCAGCAACCCTGTTTGGGAGGATGACTCAGAGTTTCCGTGGAACGCCAGCTGGAGTCAATCTTTCCCTAATCAATGGTAGCACAAGCAGAGGAGTAGATACATTAAGACAAGTTGAAGCCAAGTACCCAGCTCTGCTTTTCAAACAGCAGCTTACAGCATATGTGGAAAAGATATATGGAATGATTCGTGATAACTTGAAGAAAGAAATTTCTCCCTTGCTTGGATTATGCATCCAGGCACCGAGAACATCTAGAGCAAGCATGGTTAAGGGATCATCACGTTCTCCTGCAAACACAGAAGCCCAGCGTGCTTTGATTGCTCACTGGCAGGGGATAGTGAAGAGCTTAGGGAACTTTTTACATACTTTGAAAGCAAATCATGTTCCCCCATTTTTGGTTCGTAAGGTGTTCACACAAATTTTTTCTTTCATCAATGTACAATTATTCAATAGTCTTCTTTTAAGACGGGAATGCTGCTCATTTAGTAATGGAGAATATGTCAAAGCTGGTTTGGCTGAATTAGAGCACTGGTGTTATAAGGCAACGGATGAGTATGCAGGTTCAGCCTGGGATGAGCTCAAACACATTAGACAGGCTATTGGATTTCTGGTCATACATCAGAAACCAAAGAAAACGCTGGATGAAATAAGTCATGATCTGTGCCCAGTCCTTAGTATACAGCAGCTATATCGGATTAGCACCATGTACTGGGATGACAAATATGGAACGCATAGTGTGTCCTCTGATGTCATATCCAATATGAGAGTGTTGATGACTGAAGATTCAAATAACGCAGTTAGTAATTCTTTCCTGTTGGATGATGATTCAAGCATTCCGTTTTCTGTTGATGACATATCGAAGTCAATGGAACAGATGGATATTTCAGATATAGAGCCCCCACCACTAATTCGTGAAAACTCTGGCTTTAGCTTTTTATTGCCGCGTCCAGATTGA 4632 0.4039 MGTPVNIIVGSHVWIEDPDVSWIDGQVLKINGKDAEIETTNGKKVVANLLKIFPKDMEAAPGGVDDMTKLSYLHEPGVLQNLKIRYELNEIYTYTGNILIAINPFQRLPHIYGAHMMQQYKGAPFGELSPHVFAVADVAYRAMVNEGRSNSILVSGESGAGKTETTKMLMQYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQVNDPERNYHCFYLLCAAPQEEIEKYKLGNPRSFHYLNQSKCYELADVSDAREYLATRRAMDIVGISQKDQEAIFRVVASILHIGNIEFAKGKEVDSSVPKDDKDKFHLKTTAELLMCDADALEDALCKRVMITPEEVIKRSLDPQSATVSRDGLAKTIYSRLFDWLVDKINNSIGQDPNSKSLIGVLDIYGFESFKSNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQIDWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQTFKTNKRFIKPKLSRTDFTISHYAGEVTYQSEQFLDKNKDYVVPEHQDLLSASKCPFVAGLFPPLPEETSKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFVNRFGVLAPEAMEANCDEKTGCQKILEKIGLKGYQIGKTKVFLRAGQMAELDARRAQVLSNAAKIIQWRVRAHQTRKHYLMLRKKAIYVQSRWRGRLACKVYENMRREAASMKIQKNVRRYEARKAYKELHVSALKLQTALRAIAALKEFRFRKQTKASIIIQARWRCHKAAIYYKRLKKGSLVAQCRWRGRVARKELRKLKMAARETGALQEAKDKLEKRVEELTWRLQLEKGLRTNLEESKAQEIAKLQNSLQEMQNKVDETILQKKKVDETNAMLIKERENANKAIEEAAPVIKETQVLVEDTQKIETLTAEVESLKTSLESEKQKADDFERKYNEALVWSEERGKKLEDTEKKVRQLQESLTRLEEKITNLESENQVLRQQAVSMAPNKFLSGRSRSIMQRGAESGHIAVEAKTPLTNQELHSPSMNQRESSEVEDKPQKSLNEKQQENQELLIRCIAQHLGFAGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTFGHAIETQDNNDVLAYWLSNTSTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGTPAGVNLSLINGSTSRGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASMVKGSSRSPANTEAQRALIAHWQGIVKSLGNFLHTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSSDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDISKSMEQMDISDIEPPPLIRENSGFSFLLPRPD 1543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3142g00007 1543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 785 IPR027417 -
Gabi3142g00007 1543 MobiDBLite consensus disorder prediction 1093 1125 - -
Gabi3142g00007 1543 Gene3D - 667 730 - -
Gabi3142g00007 1543 CDD MYSc_Myo11 76 720 IPR036018 -
Gabi3142g00007 1543 SMART MYSc_2a 57 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3142g00007 1543 Gene3D - 439 623 - -
Gabi3142g00007 1543 Pfam DIL domain 1362 1465 IPR002710 -
Gabi3142g00007 1543 Pfam IQ calmodulin-binding motif 832 851 IPR000048 GO:0005515
Gabi3142g00007 1543 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Gabi3142g00007 1543 Pfam IQ calmodulin-binding motif 785 804 IPR000048 GO:0005515
Gabi3142g00007 1543 Gene3D Kinesin motor domain 65 662 IPR036961 -
Gabi3142g00007 1543 Gene3D - 833 882 - -
Gabi3142g00007 1543 Gene3D - 734 784 - -
Gabi3142g00007 1543 Gene3D - 785 832 - -
Gabi3142g00007 1543 ProSiteProfiles IQ motif profile. 735 761 IPR000048 GO:0005515
Gabi3142g00007 1543 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3142g00007 1543 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3142g00007 1543 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3142g00007 1543 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3142g00007 1543 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3142g00007 1543 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Gabi3142g00007 1543 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gabi3142g00007 1543 FunFam unconventional myosin-Va 833 881 - -
Gabi3142g00007 1543 Coils Coil 877 904 - -
Gabi3142g00007 1543 Coils Coil 916 967 - -
Gabi3142g00007 1543 Pfam Myosin N-terminal SH3-like domain 9 47 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gabi3142g00007 1543 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3142g00007 1543 SMART iq_5 830 852 IPR000048 GO:0005515
Gabi3142g00007 1543 SMART iq_5 853 875 IPR000048 GO:0005515
Gabi3142g00007 1543 SMART iq_5 782 804 IPR000048 GO:0005515
Gabi3142g00007 1543 SMART iq_5 805 827 IPR000048 GO:0005515
Gabi3142g00007 1543 SMART iq_5 757 779 IPR000048 GO:0005515
Gabi3142g00007 1543 SMART iq_5 734 756 IPR000048 GO:0005515
Gabi3142g00007 1543 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Gabi3142g00007 1543 SMART DIL_2 1361 1468 IPR002710 -
Gabi3142g00007 1543 Coils Coil 1020 1061 - -
Gabi3142g00007 1543 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Gabi3142g00007 1543 ProSiteProfiles IQ motif profile. 831 858 IPR000048 GO:0005515
Gabi3142g00007 1543 MobiDBLite consensus disorder prediction 1109 1124 - -
Gabi3142g00007 1543 FunFam Myosin 2 312 427 - -
Gabi3142g00007 1543 FunFam Class V myosin 439 577 - -
Gabi3142g00007 1543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 786 883 IPR027417 -
Gabi3142g00007 1543 Coils Coil 978 1012 - -
Gabi3142g00007 1543 PANTHER MYOSIN 55 1474 - -
Gabi3142g00007 1543 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3142g00007 1543 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Gabi3142g00007 1543 Gene3D - 252 310 - -
Gabi3142g00007 1543 CDD MyosinXI_CBD 1124 1509 IPR037975 GO:0007015
Gabi3142g00007 1543 ProSiteProfiles Dilute domain profile. 1173 1486 IPR002710 -
Gabi3142g00007 1543 FunFam Myosin heavy chain 252 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3142g00007 Gabi-Chr3142 90943 106428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3142g00007 1 1543 Myosins gene family AT1G54560 82.890 0.0 2697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3142g00007 K10357 - gmx:100816792 2821.57