Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3138g00004 ATGCCTCCCTATGGCACCCCGCCACACCCCTATGTTGCAATGTATCCCCATGGTGGCATATACGCTCATACATCCATTCCTCCGGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCGAATGGTATTGCAGATACTTCGGTAGATACTCCAGGTATCATCAAAGCTGAAGGTAAGCCTCCTGAGGTGAAGGAAAAATTACCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATAACAGGAAAAAATAATGAACTTGGTAAAACACCCAGGAAATCTGCTAATGGAATTCATTCCAAAAGTGGTGAGAGCGCTAGCGAAGGTACTAGTGAAGGAAGTGATGAAAATTCTCAGAATGATTCTCAACTAAAATCTGGGGAGAGGCAGGATTCTTTTGAAGATGAACCATCTCAAAATGGAAGTTCTGTGCAAGTTCCTCAAAATGGGGTACTTAATACACCCGGTACAGTTGTTAACCAAACTATGTCTATCCTACCTATCTCTGCTGCTGGTGCTCCCGGAGCAGTTCCTGGTCCCACAACTAATTCAAATATAGGAATGGATTATTGGGGCACACCAACTTCGTCCACTATTCCTGTGCTGCGTGGAAAGGATGAAAGAGAGCTTAAAAGGCAAAGGCGGAAGCAGTCTAATAGGGAATCTGCTCGCAGATCCAGGTTGCGCAAGCAGGCTGAATGTGATGAACTAGGTCAGCGTGCTGAGACTTTGAAAGAAGAAAATGATTCTCTCCGGACCAAAGTGAGCCGGAACAGGAGTGATTACGAGCAGCTACTTTCTGAGAATGCGGCCCTCAAGGAGAGACTAGGAGAGATACCTGGGAATGAGGGTATTAGTTCTGGCCAAAATGATCAGCATGTTGATAATGATGACACTCAACAGAGTGGTCTGACACAGGCTGTGCTGGGTGTTCATTAG 948 0.4494 MPPYGTPPHPYVAMYPHGGIYAHTSIPPGSYPFSPFAMPSPNGIADTSVDTPGIIKAEGKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTPRKSANGIHSKSGESASEGTSEGSDENSQNDSQLKSGERQDSFEDEPSQNGSSVQVPQNGVLNTPGTVVNQTMSILPISAAGAPGAVPGPTTNSNIGMDYWGTPTSSTIPVLRGKDERELKRQRRKQSNRESARRSRLRKQAECDELGQRAETLKEENDSLRTKVSRNRSDYEQLLSENAALKERLGEIPGNEGISSGQNDQHVDNDDTQQSGLTQAVLGVH 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3138g00004 315 SMART brlzneu 210 274 IPR004827 GO:0003700|GO:0006355
Gabi3138g00004 315 Pfam Disordered region downstream of MFMR 66 203 - -
Gabi3138g00004 315 MobiDBLite consensus disorder prediction 286 315 - -
Gabi3138g00004 315 MobiDBLite consensus disorder prediction 227 264 - -
Gabi3138g00004 315 MobiDBLite consensus disorder prediction 139 159 - -
Gabi3138g00004 315 MobiDBLite consensus disorder prediction 205 219 - -
Gabi3138g00004 315 MobiDBLite consensus disorder prediction 190 315 - -
Gabi3138g00004 315 Pfam G-box binding protein MFMR 1 27 IPR012900 -
Gabi3138g00004 315 CDD bZIP_plant_GBF1 215 260 IPR045314 GO:0003700|GO:0006355
Gabi3138g00004 315 SUPERFAMILY Leucine zipper domain 213 269 IPR046347 GO:0003700|GO:0006355
Gabi3138g00004 315 MobiDBLite consensus disorder prediction 77 129 - -
Gabi3138g00004 315 Gene3D - 213 267 - -
Gabi3138g00004 315 MobiDBLite consensus disorder prediction 55 159 - -
Gabi3138g00004 315 Coils Coil 230 278 - -
Gabi3138g00004 315 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 212 275 IPR004827 GO:0003700|GO:0006355
Gabi3138g00004 315 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 301 IPR044827 GO:0003700|GO:0006355|GO:0043565
Gabi3138g00004 315 Pfam bZIP transcription factor 210 272 IPR004827 GO:0003700|GO:0006355
Gabi3138g00004 315 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 217 232 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3138g00004 Gabi-Chr3138 12294 31744 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3138g00004 1 309 bZIP Transcription Factor Family AT2G35530 57.988 8.50e-120 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi3138g00004 MFMR_assoc 1.5e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3138g00004 K09060 - gmx:100101912 486.878