Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3138g00003 ATGCCTCCCTATGGCACCCCGCCACACCCCTATGTTGCAATGTATCCCCATGGTGGCATATACGCTCATACATCCATTCCTCCGGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCGAATGGTATTGCAGATACTTCGGTAGATACTCCAGGTATCATCAAAGCTGAAGGTAAGCCTCCTGAGGTGAAGGAAAAATTACCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATAACAGGAAAAAATAATGAACTTGGTAAAACACCCAGGAAATCTGCTAATGGAATTCATTCCAAAAGTGGTGAGAGCGCTAGCGAAGGTACTAGTGAAGGAAGTGATGAAAATTCTCAGAATGATTCTCAACTAAAATCTGGGGAGAGGCAGGATTCTTTTGAAGATGAACCATCTCAAAATGGAAGTTCTGTGCAAGTTCCTCAAAATGGGGTACTTAATACACCCGGTACAGTTGTTAACCAAACTATGTCTATCCTACCTATCTCTGCTGCTGGTGCTCCCGGAGCAGTTCCTGGTCCCACAACTAATTCAAATATAGGAATGGATTATTGGGGCACACCAACTTCGTCCACTATTCCTGTGCTGCGTGGAAAGGTTCCTTCTACTGGAGTTGCTGGAGGGATGGTTACTTCTGGGTCAGGAGATAATGTTCAGTCACAACTTTGGTTACAGGATGAAAGAGAGCTTAAAAGGCAAAGGCGGAAGCAGTCTAATAGGGAATCTGCTCGCAGATCCAGGTTGCGCAAGCAGCGTGCTGAGACTTTGAAAGAAGAAAATGATTCTCTCCGGACCAAAGTGAGCCGGAACAGGAGTGATTACGAGCAGCTACTTTCTGAGAATGCGGCCCTCAAGGAGAGACTAGGAGAGATACCTGGGAATGAGGGTATTAGTTCTGGCCAAAATGATCAGCATGTTGATAATGATGACACTCAACAGAGTGGTCTGACACAGGCTGTGCTGGGTGTTCATTAG 1002 0.4501 MPPYGTPPHPYVAMYPHGGIYAHTSIPPGSYPFSPFAMPSPNGIADTSVDTPGIIKAEGKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTPRKSANGIHSKSGESASEGTSEGSDENSQNDSQLKSGERQDSFEDEPSQNGSSVQVPQNGVLNTPGTVVNQTMSILPISAAGAPGAVPGPTTNSNIGMDYWGTPTSSTIPVLRGKVPSTGVAGGMVTSGSGDNVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQRAETLKEENDSLRTKVSRNRSDYEQLLSENAALKERLGEIPGNEGISSGQNDQHVDNDDTQQSGLTQAVLGVH 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3138g00003 333 MobiDBLite consensus disorder prediction 304 333 - -
Gabi3138g00003 333 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 243 258 IPR004827 GO:0003700|GO:0006355
Gabi3138g00003 333 SUPERFAMILY Leucine zipper domain 239 295 IPR046347 GO:0003700|GO:0006355
Gabi3138g00003 333 Coils Coil 262 296 - -
Gabi3138g00003 333 MobiDBLite consensus disorder prediction 139 159 - -
Gabi3138g00003 333 Pfam bZIP transcription factor 236 290 IPR004827 GO:0003700|GO:0006355
Gabi3138g00003 333 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 319 IPR044827 GO:0003700|GO:0006355|GO:0043565
Gabi3138g00003 333 Pfam Disordered region downstream of MFMR 66 203 - -
Gabi3138g00003 333 MobiDBLite consensus disorder prediction 213 333 - -
Gabi3138g00003 333 MobiDBLite consensus disorder prediction 256 282 - -
Gabi3138g00003 333 SMART brlzneu 236 292 IPR004827 GO:0003700|GO:0006355
Gabi3138g00003 333 MobiDBLite consensus disorder prediction 77 129 - -
Gabi3138g00003 333 CDD bZIP_plant_GBF1 241 278 IPR045314 GO:0003700|GO:0006355
Gabi3138g00003 333 Pfam G-box binding protein MFMR 1 27 IPR012900 -
Gabi3138g00003 333 MobiDBLite consensus disorder prediction 55 159 - -
Gabi3138g00003 333 Gene3D - 239 299 - -
Gabi3138g00003 333 MobiDBLite consensus disorder prediction 216 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3138g00003 Gabi-Chr3138 12294 31744 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3138g00003 1 320 bZIP Transcription Factor Family AT2G35530 60.486 6.66e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi3138g00003 MFMR_assoc 1.7e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3138g00003 K09060 - gmx:100101912 518.464