Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3138g00002 ATGCCTCCCTATGGCACCCCGCCACACCCCTATGTTGCAATGTATCCCCATGGTGGCATATACGCTCATACATCCATTCCTCCGGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCGAATGGTATTGCAGATACTTCGGTAGATACTCCAGGTATCATCAAAGCTGAAGGTAAGCCTCCTGAGGTGAAGGAAAAATTACCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATAACAGGAAAAAATAATGAACTTGGTAAAACACCCAGGAAATCTGCTAATGGAATTCATTCCAAAAGTGGTGAGAGCGCTAGCGAAGGTACTAGTGAAGGAAGTGATGAAAATTCTCAGAATGATTCTCAACTAAAATCTGGGGAGAGGCAGGATTCTTTTGAAGATGAACCATCTCAAAATGGAAGTTCTGTGCAAGTTCCTCAAAATGGGGTACTTAATACACCCGGTACAGTTGTTAACCAAACTATGTCTATCCTACCTATCTCTGCTGCTGGTGCTCCCGGAGCAGTTCCTGGTCCCACAACTAATTCAAATATAGGAATGGATTATTGGGGCACACCAACTTCGTCCACTATTCCTGTGCTGCGTGGAAAGGTTCCTTCTACTGGAGTTGCTGGAGGGATGGTTACTTCTGGGTCAGGAGATAATGTTCAGTCACAACTTTGGTTACAGGATGAAAGAGAGCTTAAAAGGCAAAGGCGGAAGCAGTCTAATAGGGAATCTGCTCGCAGATCCAGGTTGCGCAAGCAGGCTGAATGTGATGAACTAGGTCAGCGTGCTGAGACTTTGAAAGAAGAAAATGATTCTCTCCGGACCAAAGTGAGCCGGAACAGGAGTGATTACGAGCAGCTACTTTCTGAGAATGCGGCCCTCAAGGAGAGACTAGGAGAGATACCTGGGAATGAGGGTATTAGTTCTGGCCAAAATGATCAGCATGTTGATAATGATGACACTCAACAGAGTGGTCTGACACAGGCTGTGCTGGGTGTTCATTAG 1026 0.4503 MPPYGTPPHPYVAMYPHGGIYAHTSIPPGSYPFSPFAMPSPNGIADTSVDTPGIIKAEGKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTPRKSANGIHSKSGESASEGTSEGSDENSQNDSQLKSGERQDSFEDEPSQNGSSVQVPQNGVLNTPGTVVNQTMSILPISAAGAPGAVPGPTTNSNIGMDYWGTPTSSTIPVLRGKVPSTGVAGGMVTSGSGDNVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELGQRAETLKEENDSLRTKVSRNRSDYEQLLSENAALKERLGEIPGNEGISSGQNDQHVDNDDTQQSGLTQAVLGVH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3138g00002 341 CDD bZIP_plant_GBF1 241 286 IPR045314 GO:0003700|GO:0006355
Gabi3138g00002 341 SMART brlzneu 236 300 IPR004827 GO:0003700|GO:0006355
Gabi3138g00002 341 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 238 301 IPR004827 GO:0003700|GO:0006355
Gabi3138g00002 341 MobiDBLite consensus disorder prediction 312 341 - -
Gabi3138g00002 341 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 243 258 IPR004827 GO:0003700|GO:0006355
Gabi3138g00002 341 Gene3D - 239 294 - -
Gabi3138g00002 341 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 327 IPR044827 GO:0003700|GO:0006355|GO:0043565
Gabi3138g00002 341 MobiDBLite consensus disorder prediction 139 159 - -
Gabi3138g00002 341 MobiDBLite consensus disorder prediction 237 290 - -
Gabi3138g00002 341 Coils Coil 256 304 - -
Gabi3138g00002 341 Pfam Disordered region downstream of MFMR 66 203 - -
Gabi3138g00002 341 MobiDBLite consensus disorder prediction 302 341 - -
Gabi3138g00002 341 MobiDBLite consensus disorder prediction 77 129 - -
Gabi3138g00002 341 Pfam bZIP transcription factor 236 298 IPR004827 GO:0003700|GO:0006355
Gabi3138g00002 341 Pfam G-box binding protein MFMR 1 27 IPR012900 -
Gabi3138g00002 341 MobiDBLite consensus disorder prediction 253 290 - -
Gabi3138g00002 341 SUPERFAMILY Leucine zipper domain 239 295 IPR046347 GO:0003700|GO:0006355
Gabi3138g00002 341 MobiDBLite consensus disorder prediction 55 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3138g00002 Gabi-Chr3138 12294 31744 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3138g00002 1 328 bZIP Transcription Factor Family AT2G35530 62.614 5.57e-130 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi3138g00002 MFMR_assoc 1.8e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3138g00002 K09060 - gmx:100101912 540.421