Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3137g00016 ATGCAAGTTCCTATAGGCTTGGAAGATGATTTTAAGGGACTTGTTGATCTTGTGCAATTAAAGGCCTACTACTTTCATGGTTCAAATGGTGAAAAAGTTGTCGCTGAAGAAGTGCCTGCAGATATGGAAGCCTTGGTGGCAGAAAAAAGACGTGAACTCATAGAAAGTGTGTCAGAGGTTGACGATAAACTTGCTGAAGCTTTCCTTGGTGATGAGACCATATCAGCTGCTGATCTTAAGGAAGCAGTTCGTAGGGCTACCATAGCACAGAAATTTATACCAGTATTCATGGGTAGTGCTTTCAAAAATAAGGGTGTGCAGCCACTTCTGGATGGTGTAATTAATTATTTACCATGTCCAATTGAAGTTTGTAATTACGCCCTTGACCAAACTAAGAATGAAGAGAAGGTTGAGTTGCGTGGAAGTCCTGATGGGCCACTTGTGGCATTGGCTTTCAAGTTGGAGGAAGGGCGATTTGGTCAGTTAACATATCTAAGAATCTACGAGGGTGTCATTCGGAAGGGTGATTTTATTATTAATGTAAACACCGGAAAGAAGATCAAGGTTCCTCGCTTGGTTCGGATGCATTCGAATGAGATGGAGGACATTCAAGAGGCTCATGCTGGTCAAATAGTTGCTGTATTTGGTGTTGATTGTGCATCTGGAGATACTTTTACTGATGGGTCAGTTAGATACACAATGACTTCGATGAATGTTCCTGAACCAGTGATGTCATTAGCTGTACAGCCGGTCTCAAAAGATTCTGGAGGGCAATTTTCAAAAGCTTTGAATCGCTTCCAAAGGGAGGATCCTACTTTCCGTGTTGGCTTGGACCCAGAGAGTGGGCAGACGATCATTTCTGGAATGGGGGAACTGCATTTAGATATCTATGTTGAACGCATTAAGAGAGAGTATAAGGTTGATGCATCAGTTGGAAAGCCCCGTGTGAACTTCAGAGAAACTGTTACTCAACATGCTGATTTTGATTATTTACATAAGAAGCAAACAGGAGGGCAGGGACAATATGGACGGGTTATTGGGTATATTGAACCACTTCCTGCAGGGTCACCGACTAAGTTTGAATTTGAAAACATTCTTGTTGGTCAAGCTATTCCATCAAGTTTTATCCCAGCAATTGAGAAGGGTTTCAAAGAAGCTGCCAACTCGGGTGCCTTAATTGGACATCCAGTTGAAAATCTCCGAGTTGTTTTGACAGATGGTGCTGCCCATGCTGTTGATTCCAGTGAACTTGCATTTAAGCTGGCTTCTATCTATGCTTTTAGACAGTGCTATGCAGCTTCCAGACCAGTTATATTAGAACCCGTTATGCTTGTTGAGCTGAAAGTACCAACAGAATTTCAGGGAGCTGTTGCTGGTGACATCAACAAGAGAAAAGGTGTGATTGTTGGCAATGATCAGGAAGGAGATGATTCCGTCATTACTGCTCATGTCCCACTTAACAACATGTTTGGGTACTCTACAGCTCTTCGTTCAATGACACAGGGAAAAGGTGAATTCACAATGGAATACAAGGAACATTCACCAGTTTCTCATGATGTACAGATGCAATTGATAAACTCGTACAAGGGCAATAAGGCAGCTGAATAA 1608 0.4223 MQVPIGLEDDFKGLVDLVQLKAYYFHGSNGEKVVAEEVPADMEALVAEKRRELIESVSEVDDKLAEAFLGDETISAADLKEAVRRATIAQKFIPVFMGSAFKNKGVQPLLDGVINYLPCPIEVCNYALDQTKNEEKVELRGSPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCASGDTFTDGSVRYTMTSMNVPEPVMSLAVQPVSKDSGGQFSKALNRFQREDPTFRVGLDPESGQTIISGMGELHLDIYVERIKREYKVDASVGKPRVNFRETVTQHADFDYLHKKQTGGQGQYGRVIGYIEPLPAGSPTKFEFENILVGQAIPSSFIPAIEKGFKEAANSGALIGHPVENLRVVLTDGAAHAVDSSELAFKLASIYAFRQCYAASRPVILEPVMLVELKVPTEFQGAVAGDINKRKGVIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHSPVSHDVQMQLINSYKGNKAAE 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3137g00016 535 CDD mtEFG1_II_like 147 227 - -
Gabi3137g00016 535 Gene3D Elongation Factor G (Translational Gtpase), domain 3 246 319 - -
Gabi3137g00016 535 SUPERFAMILY Ribosomal protein S5 domain 2-like 314 436 IPR020568 -
Gabi3137g00016 535 FunFam Elongation factor G 320 457 - -
Gabi3137g00016 535 CDD EFG_III 240 315 IPR009022 -
Gabi3137g00016 535 Gene3D - 1 124 IPR027417 -
Gabi3137g00016 535 FunFam Elongation factor G 441 511 - -
Gabi3137g00016 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 118 IPR027417 -
Gabi3137g00016 535 Gene3D - 441 511 - -
Gabi3137g00016 535 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 1 527 - -
Gabi3137g00016 535 Gene3D - 320 525 IPR014721 -
Gabi3137g00016 535 FunFam Elongation factor G, mitochondrial 129 242 - -
Gabi3137g00016 535 Pfam Elongation factor G, domain IV 314 434 IPR005517 GO:0005525
Gabi3137g00016 535 SUPERFAMILY EF-G C-terminal domain-like 437 529 IPR035647 -
Gabi3137g00016 535 CDD mtEFG1_C 440 517 IPR035649 -
Gabi3137g00016 535 Pfam Elongation factor G C-terminus 438 523 IPR000640 -
Gabi3137g00016 535 SUPERFAMILY EF-G C-terminal domain-like 237 314 IPR035647 -
Gabi3137g00016 535 FunFam Elongation factor G 243 319 - -
Gabi3137g00016 535 Pfam Elongation factor Tu domain 2 160 226 IPR004161 GO:0005525
Gabi3137g00016 535 CDD EFG_mtEFG1_IV 318 433 IPR005517 GO:0005525
Gabi3137g00016 535 SMART EFG_IV_2 315 435 IPR005517 GO:0005525
Gabi3137g00016 535 Pfam Elongation Factor G, domain III 239 313 IPR041095 -
Gabi3137g00016 535 Gene3D Translation factors 128 245 - -
Gabi3137g00016 535 SUPERFAMILY Translation proteins 85 237 IPR009000 -
Gabi3137g00016 535 SMART EFG_C_a 437 524 IPR000640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3137g00016 Gabi-Chr3137 370798 432640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3137g00016 109 504 Eukaryotic Initiation Factors Gene Family AT1G56070 23.457 9.41e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3137g00016 K02355 - gmx:100783315 1015.37