Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3137g00006 ATGGACAAGGTAGCCGCTGAACTTCAAAGTGATGCAGATTCAGTGTTGTCAGATCCTTCTCTCCATCATCAGACATGTGAAGGAAATGGAAAAGGTGAAAAGACCTCCTTGATTCCACAGTCTAAACGACCTAGCCTCTCCTCTCTGCAAATACCAGCAAGGTCACTAGAAAGTGCATTATCTTCTTTTACTAAGACAGATGGTCCTACATTGTCAAGTCCAGGTTCCACCAGAGGACTGCCCCCAAGGCCAAATTCAGCCAAAGTGAAGTCCTCCATAAGAAATTTGCTTCCTGCGAGGAGCTTTAGGGCTAAAACTTGTTCCCAAGATTGTGAAAGGACAGTTCTGATTGTTACTGATACTTTACCATCAGATGGTCCTGTAGATAAGCCTTCAACTTCAAGGACCCTTTCTCTTAATAAGATATTGTTCCCTTCATCAACAAAAGCAGCATATTCATTACCAGTTACTCCAATTGCAACTTCATGTGCAGCGAATGTACATGGAAGACATCTAGGGAGTGATTCTGATTTAAGTAAAACGGAAGTAAATCAGCATATGACTCGATCATTTTCAGTTCCAGTTAATGTCAAAACCACTAATTTAAGGCCTACAGATTCTAGGGGACTGATTCGTGTAATTTCAGCAAAATCACATCTACCAACTATTGATGGCATTTCAACTCACAATGCTTCAGTGTCAGATATTGTCATTGAAGATGCTTCTGAGGATATTCCAGAGGAAGAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGTGAAGGAGGGAATACTCTTAGGATGGAGTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTACTATCAAAGGAAACAAGACCTGTGATGTCTGCAAGGAGGATGTCCGAAACCTCCCTGTGACACTATTGAAAATATCTAATCCTGTAACTGTTGCTCGGCAGCCAATGAATGCACCACAGCAGAGACAAATAGCTTATTATAGGATATGGGAGGATGTACCAGTACTTGTCTTGGTCAGCGTGCTTGCATACTTTTGTTTTCTAGAGGAACTACTGGTTTCAGATTTGGGCCTTCGCGCTCTTGCCATTTCATTACCTTTCTCATGTGTTTTAGGTCTCCTTTCATCTATGATTGCGTCAACAATGGTGAGCAGGAGTTACATATGGGCTTATGCTTGCTTCCAGTTCGCAATTATCTTCCTGTTTGCTCATGTATTTTATACTATACTTAATGTTAGTGCGATTCTCTCAGTTCTTCTTTCATCTTTCACTGGATTTGGGATTTCAATCAGCATGAGTTCTCTCCTAATGGAATATATTAGATGGAGAACACGTAGGCAGATTCAATCTTCTAATCAGAATGTTATCACGACGCAGAGGCAGCGCCGTGATCATGCTCAGCCGCAACAAGAACATTCAGGACAGCATCATCAACTGCAAAGGCTGCAGCAAGTGCAGCACCAATGA 1491 0.4205 MDKVAAELQSDADSVLSDPSLHHQTCEGNGKGEKTSLIPQSKRPSLSSLQIPARSLESALSSFTKTDGPTLSSPGSTRGLPPRPNSAKVKSSIRNLLPARSFRAKTCSQDCERTVLIVTDTLPSDGPVDKPSTSRTLSLNKILFPSSTKAAYSLPVTPIATSCAANVHGRHLGSDSDLSKTEVNQHMTRSFSVPVNVKTTNLRPTDSRGLIRVISAKSHLPTIDGISTHNASVSDIVIEDASEDIPEEEAVCRICLVELGEGGNTLRMECSCKGELALAHQDCAVKWFTIKGNKTCDVCKEDVRNLPVTLLKISNPVTVARQPMNAPQQRQIAYYRIWEDVPVLVLVSVLAYFCFLEELLVSDLGLRALAISLPFSCVLGLLSSMIASTMVSRSYIWAYACFQFAIIFLFAHVFYTILNVSAILSVLLSSFTGFGISISMSSLLMEYIRWRTRRQIQSSNQNVITTQRQRRDHAQPQQEHSGQHHQLQRLQQVQHQ 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3137g00006 496 SUPERFAMILY RING/U-box 248 302 - -
Gabi3137g00006 496 ProSiteProfiles Zinc finger RING-CH-type profile. 244 306 IPR011016 GO:0008270
Gabi3137g00006 496 MobiDBLite consensus disorder prediction 13 80 - -
Gabi3137g00006 496 MobiDBLite consensus disorder prediction 461 496 - -
Gabi3137g00006 496 MobiDBLite consensus disorder prediction 480 496 - -
Gabi3137g00006 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 307 IPR013083 -
Gabi3137g00006 496 SMART ringv_2 251 300 IPR011016 GO:0008270
Gabi3137g00006 496 CDD RING_CH-C4HC3_MARCH 252 300 - -
Gabi3137g00006 496 Pfam RING-variant domain 252 299 IPR011016 GO:0008270
Gabi3137g00006 496 PANTHER OS02G0165000 PROTEIN 30 467 - -
Gabi3137g00006 496 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3137g00006 Gabi-Chr3137 134355 160671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3137g00006 246 306 C3H Transcription Factor Family AT2G37950 48.438 1.13e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3137g00006 - - pvu:PHAVU_006G002500g 696.812