Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3136g00002 ATGTCAAGTGGAGCGACGTATTGGTGTTATGCATGCAGGCAGCCAATCGTGCTTGGAGGGAGTGATGTCATTTGCCCTTACTGTGATGGAGGCTTTGTACAAGAACTTAGTGAGATGCGAGAACATGGCTTTTCATCACAGTTGGAAGAGTATCATCAATCGCCTGACATTTTTGATGCTATACATGCTGTTATGGGGCAAAGAGGTTCTGAACCAATAATTGGGCTTAGAGACGCTGTTGATACTTTCATGAGGCAGAGAATGGCTGGACGATACCCAAACTTTGATGTTAGAGGGAGGTCTGGTTCTGCCCCAGTTCCTGAACAGAGTTGGGGTATTATCAGTTCTGGTCCTTATTTGATATTTCATGGTCAACCTCCTGGGTTCATCTTGTCTAATGGTAGCCCAAGAGGTGGTCCTAGGCGCATTGATTTTGGTAACTATTTGATGGGTCATGGACTGGAAGAACTTGTTCAACAACTCACAATGAATGATCAGCTTGGTCCGGCCCCTGCCTCGCGTTCTTCAATTGATGCAATGCCCACTATTAAGATCACACAGGCCCATCTTCGCTCTGATTCGCACTGTCCGGTTTGTAAAGAAAAATTTGAATTGGGATCTGAGGCCAGGGAGATGCCATGTAACCATATTTACCACTCGGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCTGTTTGTCGTGTTGAGCTGCCTCCTCAAGGACATGCTAGTTCTCGTGGCAATCGAAGTTGGGGAAGAAGGAATGCCAATAGCAGTAGTGACAATGATATCTCCAGGGGCAGGGAGAATAGCCTGCCGAACCAAGGAAGGAGAAATCCGCTATCGTTTTTGTGGCCATTCCGTTCTTCTAGTTCAAATACTAACCATAATGCTGACAATGGGGGAAGCAGCTCTTCAACTAATGACCAGAATAATGGAAGAAGTAGGGAATGA 963 0.4579 MSSGATYWCYACRQPIVLGGSDVICPYCDGGFVQELSEMREHGFSSQLEEYHQSPDIFDAIHAVMGQRGSEPIIGLRDAVDTFMRQRMAGRYPNFDVRGRSGSAPVPEQSWGIISSGPYLIFHGQPPGFILSNGSPRGGPRRIDFGNYLMGHGLEELVQQLTMNDQLGPAPASRSSIDAMPTIKITQAHLRSDSHCPVCKEKFELGSEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGHASSRGNRSWGRRNANSSSDNDISRGRENSLPNQGRRNPLSFLWPFRSSSSNTNHNADNGGSSSSTNDQNNGRSRE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3136g00002 320 MobiDBLite consensus disorder prediction 246 320 - -
Gabi3136g00002 320 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
Gabi3136g00002 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 243 IPR013083 -
Gabi3136g00002 320 Pfam Ring finger domain 195 237 IPR001841 -
Gabi3136g00002 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 96 241 - -
Gabi3136g00002 320 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Gabi3136g00002 320 SUPERFAMILY RING/U-box 176 243 - -
Gabi3136g00002 320 SMART ring_2 196 236 IPR001841 -
Gabi3136g00002 320 CDD RING-H2_RNF126-like 196 237 - -
Gabi3136g00002 320 FunFam E3 ubiquitin-protein ligase RING1-like 159 243 - -
Gabi3136g00002 320 MobiDBLite consensus disorder prediction 244 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3136g00002 Gabi-Chr3136 8886 11544 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3136g00002 140 252 C3H Transcription Factor Family AT5G01980 40.870 1.47e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3136g00002 K11982 - gmx:100813674 536.184