Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3129g00034 ATGCCAATCTTCTCTCTTCTCTTGTTCTTCCTCTTTCTCACCAATGCTAACTCTGAGTCTCAGTCTAAGCTGTATGATCAAGAACATGCAGTCCTAATGAAGATAAAGCAATACCTGCAAAACCCATCATTCCTTAGTCACTGGACCCCATCAAAATCTTCACATTGCTCTTGGCCAGAGATCACCTGCACCAATGGATCTATCACTGCACTGGCTATGATCAACACCAACATCACTCAAACATTACCACCTTTCCTATGTGACCTCACAAATCTCACACATGTTGATTTCAACTTTAATTTCATTCCTGGGGAGTTCCCAACATCTCTCTACAATTGTTCCAAGTTGGAGTACCTTGACCTCTCACAGAACTGCTTTGTTGGTAAGATTCCTGATGACATTGACAGCTTGGCTAGCCTGCGTTTTCTTAGCCTTGGTGGCAACAACTTTTCTGGTGATATTCCAGCAAGCATTGGTAGGTTGAAGGAGCTAACAAGTCTTCAACTTTATCAGTGTCCTTTCAATGGTACTTTCCCTGCTAATATTGGCAATTTGTCCAACCTTGAAACCTTTTATATGTTCTCAAACAGCATGCTCCCTCCAACAAAGTTGCCATCAAGCTTGACCCAATTGAACAAATTGAAGGTCTTTCATATGTATGACTCCAACTTGGTTGGGGAAATCCCTGAAAGCATTGGAGAAATGGTAGCATTAGAGGAATTGGATTTATCAGGAAATGGTTTAAGTGGACAAATTCCCAACAGTTTGTTCACACTGAAAAACCTGAACATACTTTTTCTTTACAAAAACAGCCTTTCTGAGGAGATACCTGGAGTGGTTGAAGCATTCAACTTAACAAGCCTCGATCTTTCAGAGAATAATCTCACTGGGAAAATACCAGATGACTTGGGAAAGCTCAAAAAGTTAACTTACTTGAGTTTGTCTATGAATCAATTATCAGGAGAGGTACCAGAAAGCATGGGTAGTCTACCAGCTCTTACTGATTTTGTTGTTTTTCAAAACAATTTATCAGGTACTCTTCCTCTAGACTTTGGTCGGTTCTCAAAGCTTGAAACGTTTCAGGTTGCATCTAATAGTTTCACAGGAAGGCTGCCAGAGAACTTGTGCTATTATGGAGGTTTAATTGGTTTAACTGCTTATGACAATAACTTGAGTGGGGAGTTGCCAGAATCACTAGGAAGATGCAGTAGCCTGCAATATCTGAGAGTTGAAAACAATGAGTTTTCTGGCAACATTCCTAGTGGTCTATGGACATCTATGAACTTGACAGCATTTAAGATAAATCAGAACAAGTTCATTGGTGAGCTTCCTGAAAGATTGTCTTGGAATATTTCATTCTTGGCCATAAGCTACAATCAATTTTCTGGAAGAATTCCAGATGGAGTGGCTTCCTGGAAGAATGTGGTGGTGTTCAATGCCAGTAACAACCACTTCAATGGAAGCATTCCACTGGAGCTAACATCTCTTCCCCAGCTAACAACTCTTCTGCTTGATCAGAACCAGCTCACTGGGCCACTTCCATCAGATATAATATCATGGAAGTCCCTAATAACTCTAAATTTGAGCCACAATCAACTCTCTGGAGAAATCCCTGATGCAATTGGTCGGTTAGCTGCTCTTAATATATTAGACTTGTCAGATAACAAAATCTCTGGCCAAATTCCACCTCAACTAGCCCTTAAAAGACCCACCAATCTCAATCTTTCATTCAATCATTTGTCAGGGAAGATTCCAAGTGAATTAGAAAACCTTGTGTATGCCAGCAGCTTTTTGAACAATTCTGGTCTCTGTGCTGATACCCCAGTATTAAACCTTACCTTGTGCAATTCTGTCCCTCAAAAATCAAGCAAGGTTTCATCATCTTGGTCTCCTGCTATGATCATAAGCGCCGTGGTAGTAGCTTCCTTGCTGGCTTTATTGTCGTCACTCTTGATGATCAGAGTTTACAGAAAAAGAAAGCAAGAAATGAAGAAGTCATGGAAGCTCACTTCTTTTCAGAGGCTGAGTTTCACAAAATCAAGCATTGTGTCCTCAATGTCAGAACATAATATTATTGGCAGTGGTGGATATGGTGCAGTATACCGTGTTGCTGTTGATGGTGGATTAGGCTATGTCGCCGTGAAAAAGATATGGAGTAGCAGAAAGTTAGAGCAGAAGCTTGTGGATTCATTTCTTGCAGAAGTTGAGATACTGAGCAATATTCGTCATAACAACATTGTAAAGTTGCTATGCTGTATCTCCGGTCAGGATTCTCTGCTCCTTGTCTATGAGTATCTGGAAAACCATAGCCTTGATAGATGGCTGCACAAGAAAAGTAAGCCATCAGCTATGTCAGGTTCAGCCCATCATAACCTCCTTGATTGGCCTAAGAGATTGCATATAGCCATTGGAGCTGCTCAAGGTTTATGTTACATGCATCATGATTGTTCACCACCTGTTGTTCATCGAGATGTGAAAACAAGTAACATTCTCTTGGATTCTCAATTCAATGCAAAAGTTGCTGATTTTGGTCTGGCCAGGATGTTGATCAAGCCAGAAGAACTTGCTACCATGTCAGCTGTGGCTGGCACATTTGGCTATATTGCTCCAGAATATGCTCAAACAACAAGAGTCAATGAGAAGATAGATGTCTATAGCTTTGGAGTTATCCTATTGGAATTGACAACTGGAAAAGAAGCTAATCATGGAGATGAATACTCGTCTCTTGCAGAATGGGCGTGGCGCCACATTGAAGTAGGAAGCGATATAGAAGATGTTCTGGATGAAGAAATTAAGGAACCATGTTACTTGGATGAAATGTGCAGCATCTTCAAACTTGGGGTTATTTGCACCACAACACTGCCAGCTAGTAGACCTTCCATGAAGGAAGTCCTGAAAATATTGCTCAGCTGCAACGATCCACTTGCAAATGGAGAGAAGATTGTTGGTTTTTATGATGCTGTTCCACTTCTTAAGAATTCAAAATGGGACAAGTAG 2997 0.4081 MPIFSLLLFFLFLTNANSESQSKLYDQEHAVLMKIKQYLQNPSFLSHWTPSKSSHCSWPEITCTNGSITALAMINTNITQTLPPFLCDLTNLTHVDFNFNFIPGEFPTSLYNCSKLEYLDLSQNCFVGKIPDDIDSLASLRFLSLGGNNFSGDIPASIGRLKELTSLQLYQCPFNGTFPANIGNLSNLETFYMFSNSMLPPTKLPSSLTQLNKLKVFHMYDSNLVGEIPESIGEMVALEELDLSGNGLSGQIPNSLFTLKNLNILFLYKNSLSEEIPGVVEAFNLTSLDLSENNLTGKIPDDLGKLKKLTYLSLSMNQLSGEVPESMGSLPALTDFVVFQNNLSGTLPLDFGRFSKLETFQVASNSFTGRLPENLCYYGGLIGLTAYDNNLSGELPESLGRCSSLQYLRVENNEFSGNIPSGLWTSMNLTAFKINQNKFIGELPERLSWNISFLAISYNQFSGRIPDGVASWKNVVVFNASNNHFNGSIPLELTSLPQLTTLLLDQNQLTGPLPSDIISWKSLITLNLSHNQLSGEIPDAIGRLAALNILDLSDNKISGQIPPQLALKRPTNLNLSFNHLSGKIPSELENLVYASSFLNNSGLCADTPVLNLTLCNSVPQKSSKVSSSWSPAMIISAVVVASLLALLSSLLMIRVYRKRKQEMKKSWKLTSFQRLSFTKSSIVSSMSEHNIIGSGGYGAVYRVAVDGGLGYVAVKKIWSSRKLEQKLVDSFLAEVEILSNIRHNNIVKLLCCISGQDSLLLVYEYLENHSLDRWLHKKSKPSAMSGSAHHNLLDWPKRLHIAIGAAQGLCYMHHDCSPPVVHRDVKTSNILLDSQFNAKVADFGLARMLIKPEELATMSAVAGTFGYIAPEYAQTTRVNEKIDVYSFGVILLELTTGKEANHGDEYSSLAEWAWRHIEVGSDIEDVLDEEIKEPCYLDEMCSIFKLGVICTTTLPASRPSMKEVLKILLSCNDPLANGEKIVGFYDAVPLLKNSKWDK 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3129g00034 998 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 258 969 - -
Gabi3129g00034 998 FunFam Receptor-like protein kinase HSL1 666 765 - -
Gabi3129g00034 998 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515
Gabi3129g00034 998 Pfam Leucine rich repeat 284 343 IPR001611 GO:0005515
Gabi3129g00034 998 ProSitePatterns Protein kinases ATP-binding region signature. 692 716 IPR017441 GO:0005524
Gabi3129g00034 998 FunFam Receptor-like protein kinase HSL1 isoform A 25 176 - -
Gabi3129g00034 998 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Gabi3129g00034 998 Gene3D Ribonuclease Inhibitor 27 136 IPR032675 -
Gabi3129g00034 998 SUPERFAMILY RNI-like 283 592 - -
Gabi3129g00034 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Gabi3129g00034 998 FunFam Receptor-like protein kinase HSL1 isoform A 289 615 - -
Gabi3129g00034 998 CDD STKc_IRAK 692 968 - -
Gabi3129g00034 998 SMART LRR_typ_2 496 520 IPR003591 -
Gabi3129g00034 998 SMART LRR_typ_2 306 330 IPR003591 -
Gabi3129g00034 998 SMART LRR_typ_2 544 568 IPR003591 -
Gabi3129g00034 998 SMART LRR_typ_2 137 161 IPR003591 -
Gabi3129g00034 998 SMART LRR_typ_2 89 113 IPR003591 -
Gabi3129g00034 998 SMART LRR_typ_2 235 259 IPR003591 -
Gabi3129g00034 998 Gene3D Transferase(Phosphotransferase) domain 1 766 980 - -
Gabi3129g00034 998 Gene3D Ribonuclease Inhibitor 137 201 IPR032675 -
Gabi3129g00034 998 Pfam Protein kinase domain 688 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3129g00034 998 Gene3D Ribonuclease Inhibitor 202 281 IPR032675 -
Gabi3129g00034 998 Gene3D Ribonuclease Inhibitor 282 522 IPR032675 -
Gabi3129g00034 998 SUPERFAMILY L domain-like 33 368 - -
Gabi3129g00034 998 PRINTS Leucine-rich repeat signature 544 557 - -
Gabi3129g00034 998 PRINTS Leucine-rich repeat signature 285 298 - -
Gabi3129g00034 998 Pfam Leucine Rich Repeat 522 543 IPR001611 GO:0005515
Gabi3129g00034 998 Pfam Leucine Rich Repeat 238 256 IPR001611 GO:0005515
Gabi3129g00034 998 Gene3D Phosphorylase Kinase; domain 1 667 765 - -
Gabi3129g00034 998 ProSiteProfiles Leucine-rich repeat profile. 284 307 IPR001611 GO:0005515
Gabi3129g00034 998 ProSiteProfiles Protein kinase domain profile. 686 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3129g00034 998 Gene3D Ribonuclease Inhibitor 523 605 IPR032675 -
Gabi3129g00034 998 FunFam Kinase family with leucine-rich repeat domain-containing protein 766 983 - -
Gabi3129g00034 998 SMART serkin_6 686 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3129g00034 998 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 181 281 - -
Gabi3129g00034 998 ProSiteProfiles Leucine-rich repeat profile. 546 568 IPR001611 GO:0005515
Gabi3129g00034 998 SUPERFAMILY Protein kinase-like (PK-like) 678 969 IPR011009 -
Gabi3129g00034 998 SMART LRR_sd22_2 306 332 - -
Gabi3129g00034 998 SMART LRR_sd22_2 544 575 - -
Gabi3129g00034 998 SMART LRR_sd22_2 89 121 - -
Gabi3129g00034 998 SMART LRR_sd22_2 259 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3129g00034 Gabi-Chr3129 441332 444801 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3129g00034 28 968 Receptor kinase-like Gene Family AT5G25930 52.055 0.0 982
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3129g00034 Pkinase 4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3129g00034 - - gmx:100785907 1592.02