Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3129g00025 ATGTCAAACTTGCATTACATTCTCAATGTGTTAGGAGTTCTCCTTCTTCTGCAAAATCCCATTAAAACACATTGCCATACCAAAGGATTTCAACCAGGACATTCTTCGGGGAATGGTTTATCAATCAATATGACAAGAGTACAGTTTTCAGAACAACAATTCATGAAATGGGTGAACTTTGTTGGTAGCCTCAAACACTCAGTTTTCAAGGCAGCAAAAAATAAGCTTTCTGCTTCTTACACTTTGCACGTTGATAAGAATCCTGCTTTTGGAGATTTTACGTCAATTCAAGAAGCCATTGATTCACTTCCTTTCATAAATCTTGTGAGAGTGGTCATCAAGGTCCATGCAGGGGTTTACACAGAGAAAGTTAACATTCCTACATTGAAATCCTTCATAACCATAGAAGGAGCTGGTGCAGATAAAACCATTGTTCAATGGGGTGACACTGCTCAAACACCTGGTCCTAGAGGGAGGCCAATGGGAACCTATGGTTCAGCAACTTTTGCAGTGAATTCACCTTATTTCATTGCCAAGAACGTCACATTCCAAAATACTACTCCTGTTCCTGCACCAGGAGCAGTTGGAAAGCAAGCTGTGGCATTTAGGATTTCAGCAGACAATGCAGCATTCTTGGGATGCAAATTCTTAGGAGCACAAGATACACTTTATGATCATCTTGGCAGACATTACTATAAGGATTGTTATATTGAAGGCTCTGTTGATTTCATATTTGGCAATTCTCTCTCACTTTTTGAGGGATGTCACGTGCATGCCATAGCACAGAATACAGGGGCACTTACAGCTCAAGGAAGGAGCAGTATATTGGAAGACACGGGGTTCTCATTTGTGAACTGTATGGTCACGGGGTCAGGGGCACTATACCTTGGAAGAGCTTGGGGTCCCTTTTCTCGCGTGGTCTTCGCTTATACCTATATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTATTCTATGGACAGTACAAATGCACAGGACCTGGAGCAAGCTTTGCAGGGAGAGTATCATGGTCAAGAGAACTTACTGATGATGAAGCTAGACCTTTTCTTTCACTTAGCTTTATTGATGGGACTGAATGGATCAAATTTTAG 1143 0.4182 MSNLHYILNVLGVLLLLQNPIKTHCHTKGFQPGHSSGNGLSINMTRVQFSEQQFMKWVNFVGSLKHSVFKAAKNKLSASYTLHVDKNPAFGDFTSIQEAIDSLPFINLVRVVIKVHAGVYTEKVNIPTLKSFITIEGAGADKTIVQWGDTAQTPGPRGRPMGTYGSATFAVNSPYFIAKNVTFQNTTPVPAPGAVGKQAVAFRISADNAAFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNSLSLFEGCHVHAIAQNTGALTAQGRSSILEDTGFSFVNCMVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVSWSRELTDDEARPFLSLSFIDGTEWIKF 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3129g00025 380 SUPERFAMILY Pectin lyase-like 78 379 IPR011050 -
Gabi3129g00025 380 Gene3D - 76 380 IPR012334 -
Gabi3129g00025 380 ProSitePatterns Pectinesterase signature 2. 237 246 IPR033131 -
Gabi3129g00025 380 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 71 379 - -
Gabi3129g00025 380 Pfam Pectinesterase 91 374 IPR000070 GO:0030599|GO:0042545
Gabi3129g00025 380 FunFam Pectinesterase 78 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3129g00025 Gabi-Chr3129 345688 350356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3129g00025 93 378 Carbohydrate Esterase AT5G47500 49.826 3.85e-101 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3129g00025 K01051 - gmx:100793314 690.263