Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3129g00023 ATGGGGAACAAAATCGCGCGAACGACGCAAGTTTCGGCGTCGGAGTACTACCTACACGACTTGCCGTCGACGTACAATCTGGTGCTGAAGGAGGTGCTTGGACGCGGTCGTTTCTTCAAGTCGATTCAGTGCAAGCACGACGAGGGTTTGGTCCTCGTCAAGGTCTATTTCAAGCGTGGTGATTTTCTCGATCTCTCTGATTACGAGCGCCGTCTCTCTCAGATCAAGGACATTTTCAGCGCCATTGAACACCCTCACGTTTGGCCCTTTCAGTTTTGGCAAGAAACAGATAAAGCAGCATACCTTTTGAGGCAATATTTCTTTCATAATCTGCATGATCGATTAAGCACTCGGCCTTTTCTTAGTCCCGTTGAGAAGAAATGGTTGGCTTTTCAGTTGCTTTTAGCTGTAAAACAGTGCCACGAGAAAGGAGTATGTCATGGTGATATCAAGTGTGAGAATGTGCTGATTACGTCCTCGAATTGGCTTTACCTTGCTGACTTTGCATCTTTCAAACCCACTTACATTCCATATGATGACCCATCAGATTTCTCTTTTTTCTTTGATACTGGTGGAAGAAGACTCTGTTATCTAGCTCCTGAGAGGTTTTACGAACATGGAGGGGAGATGCAGGTGCCACAAGATACCTCATTAAAGCCATCTATGGATATATTTGCTGTTGGGTGTGTGATTGCTGAACTTTTCCTTGAGGGGCAGCCACTATTTGAACTGTCTCAACTTCTTGCTTATCGTAGAGGGCAATATGATCCAAGTCAACATCTTGAAAAAATACCAGATATTGGAATCCGTAAAATGATACTGCACATGATTCAGTTAGAACCAGAGTTTCGATTTTCTGCTGAAAGATATATAAAGGAATATGCTGCGGTTGTATTTCCGATCTATTTTTCACCATTTCTGCATGATTTTTACCGTTGCTGGATTCCTCTCCATTCTGATATGAGGGTTTTACTATGTCAAAGTGCTTTCCAGGAGATACTTAAACAAATGATGAACAAGAAGTCATCTGATGATACGGGTGTTACTTCTGGAGAACTTTTGGAACAGATGGTTGCTAAAGAAAGTGTGAGTTTCATGAAGGACTCGCTTATGAAGAGAGAGGACATAGGCAAAGGCTTGGTTCATGATCACTATGAACTTCTTGGTGATATTAGTAGCCTACTGAGGGATGCTAAAAAAAATAATTTTCCATCTGGTCCCAGACATGTAACAGGAAATGCACACAATTCTACCTTTCCTGAAAGTCTAAAAAATATGCAGTCTCCTGGTGAGCTGCTTCAAACTATCTCCAATGCATTTCGAGGAAATGACCATCCATTTCTGAAAAATATTACTATGAATGATTTAAATTCATTGATGTCTGAGTATGATAGTCAATCAGATACATTTGGAACACCTTTTCTACCATTACCAAAGGATAGTATGAGATGTGAAGGCATGGTTTTGATAACTTCTTTGCTCTGCTCCTGCATACGCAATGTCAAGTTGCCTCACTTGAGGAGGGCGGCAATACTCTTGTTGAAGGCTTCTGCGCTATATATCGATGATGAAGATCGTTTACAGCGTGTTATCCCATATGTGATTGCAATGCTTTTGGATCCTGCAGCTATTGTACGTTGCGCTGCTTTAGAGACTTTGTGTGACATTCTGCCCTTAGTGCGAGATTTTCCCCCTAGTGATGCAAAGATATTTCCGGAGTATATTCTTCCAATGCTTTCTATGCTTCCTGATGATCCAGAGGAAAGTGTGAGGATATGCTATGCCAGCAATATAGCTAAGTTGTCACTAACTGCGTATGGATTCTTGATGCACTCAATAAGCTTGAGCGAGGCAGGTGTCCTTGATGAATTGAGTTTGCCACAGAAGCCATTGATATCATCCACTCAGACCTCTGGAAGAATGAAGAGGATAAATGGCGATGTCCAACTTCTGCAGCTGAGGAAATCCATTGCAGAGGTTGTCCAAGAGCTTGTTATGGGTCCAAAGCAAACACCAAATATTCGGAGAGCACTTCTTCAGGACATTGGTAAACTGTGCTTCTTCTTTGGTGTGAGACAGAGTAATGACTCTCTCTTACCTATCCTTCCTGCTTTCTTAAATGATCGAGATGAGCAATTAAGGACAGTATTCTATGAAAAGATTGTTTATGTGTGCTTTTTTGTGGGCCAAAGAAGTGTAGAAGAATATCTATTACCTTACATTGAGCAAGCTTTAAGTGACATGACAGAAGCTGTCATGGTTAGAGCATTAGATTGTTTGACTATTCTATGCAAAAGTGGGTTCTTCCGGAAGAGGATATTGCTTCAAATGATTGAGCGTGGCTTTCCTTTATTGTGTTATCCTAGTGAATGGGTACGAAGATCAACTGTCTCTTTCATTGCTGCTAGCAGTGAGAGCTTGGGTGCAGTAGATTCTTATGTTTTCCTTGCTCCTGTTATACGGCCTTTCCTTCGTAGACAACCTGTGTCTCTTGCTTCAGAGAAGGCTCTTTTGTCATGTCTAAAACCCCCTGTCTCAAGACAGGTTTTCTATGAAGTCTTGGAGAACTCCAGGAGTTCGGACATGTTAGAAAGACAGAGAAAGATATGGTATAGTTCATCACAATCTAAAATATGGGAAATGGATTTACTGAAAAAAGGAATTGATGAGTTGGACTCATTAAAGAACTGGACTGACAAGCAACAAGGTCCTGGGGTTCAACAAACTGTTGGCACTGCCTTCCAACAGCCGGAGCGAACTGATTGTGACAAAGCTGAGGCAAAATTAAGAGATATGGGGGCCTTTATGCATAATGATAGCAATATAGTAGGACATCGTGATCCTCAATGCATGGAGAAGTTACAGTTTTCAGGATTTATGTCACCACATTTTAGTGGTGTAAACAGTTTGACATTTGAAAAGCCATCAGAAGGCATACCTTTGTACTCCTTCAGTATGGACAGGCGAGGCATGGGAATCCCTCCTGCAGCATCTGATTCTCCATTACAAATGAATTCCCTGGGTGTTAGTTCATCTGCGATGCCTTGGGTTAATCCACTTAGTAAGTCCTTTGATTTGGCTAGTTCTGTTCCAGCACCAAAGCTTTTTTCCGGTTCTTTTAGCATCAGCAATGGTTCTAAACAGTTCCATCGAGTGGTACATGAACCAGATCCCAGGGAAAATGACACAGCCTATGTAAACAGCACATTTCAAGATGTGGGATTATCTACTAATATTAAAGGTACTTCAATTGCACTGGAAGATGCAACTGCCCAAACTGATCTGTCAGGATTTCAATCTTTTGCTCGAACATCCATTCCTGATTCTGGTTGGAGGCCCCGTGGGGTGTTGGTTGCACACCTCCAGGAGCACCGTTCAGCTGTCAGTGACATAGCAGTTTCTGGTGATCAAAGCTTCTTTGTGAGCGCATCTGATGACTCTACAGTCAAGATTTGGGATTCCAGAAAGCTGGAAAAGGACATTTCATTCAGGTCCAAGCTAACTTATCACCTGGAGGGAAGCCGTGCGTTATGTGCAACGATGCTTCCATATTCTGCACAAGTAATAGTTGGAGCATCTGATGGATTAATTCATATGTTTTCTATTGATCATATCTCTAGAGGTCTAGGAAATGTTGTTGAGAAGTATTCTGGTATTGCTGACATCACTAAGAAGGATATCAAGGAAGGTGCCTTACTCAGCCTTTTGAATTGCCCTGTGGATAATTATTCCATCATGTATAGCACCCAGAACTGTGGCATTCATCTGTGGGATACTAGATCAAATTCCAATACCTGGACCTTAAAAGCTACTCCTGAGGAGGGCTATGCTTCTTCTCTGGCATCTGGGCCTTGTGGTAATTGGTTTGTGTCAGGGTCTTCAAGGGGTGTTATTACACTTTGGGATCTGAGGTTTCTAATACCTGTGAACTCTTGGCAGTATTCTCTTGCATGCCCTATAGAAAAGATGTGTCTCTTTCTTCCTCCTCCAAATGTTTCTCCGTCTTCAACTGCCAGGCCCCTTGTTTATGTGGCAGCTGGTTGCAATGAAGTTTCTCTTTGGAATGCAGAGAATGGTAGCTGCCACCAGGTATTGAGGATGGCCAATTATGACAGTGATGCAGAAATGTCTGATCTGCCTTGGGCCTTGGCCAGACCTTCAAGTAAACCAACTTCTCAATCAGATCCAAGACGAAATGTTAATCGCAAGTACAGAGTTGATGACCTAAATGAACCTCCTCATCGTCTTCCTGGTATTCGTTCATTACTTCCCTTACCAGGGGGTGATTTACTGACTGGGGGCACTGATTTAAAGATACGACGATGGGATCATTACAGTCCTGACAGAAGTTACTGTATTTGTGGACCAAACTTAAAAGGAATGGGAAATGATGATTTTTACGAAACAAAATCTAGTTTTGGAGTGCAAGTTGTACAGGAGACAAAAAGACGTCCTCTTACAACCAAGCTGACAGCGAAGGCAATTCTTGCAGCTGCTGCCACTGATTCTGCCGGTTGCCATCGTGATTCTATTATTTCCTTGGCTTCTGTAAAGTTAAACCAGAGACTCTTACTGTCTAGTGGCAGAGATGGGGCCATAAAGGTTTGGAAGTAA 4614 0.4235 MGNKIARTTQVSASEYYLHDLPSTYNLVLKEVLGRGRFFKSIQCKHDEGLVLVKVYFKRGDFLDLSDYERRLSQIKDIFSAIEHPHVWPFQFWQETDKAAYLLRQYFFHNLHDRLSTRPFLSPVEKKWLAFQLLLAVKQCHEKGVCHGDIKCENVLITSSNWLYLADFASFKPTYIPYDDPSDFSFFFDTGGRRLCYLAPERFYEHGGEMQVPQDTSLKPSMDIFAVGCVIAELFLEGQPLFELSQLLAYRRGQYDPSQHLEKIPDIGIRKMILHMIQLEPEFRFSAERYIKEYAAVVFPIYFSPFLHDFYRCWIPLHSDMRVLLCQSAFQEILKQMMNKKSSDDTGVTSGELLEQMVAKESVSFMKDSLMKREDIGKGLVHDHYELLGDISSLLRDAKKNNFPSGPRHVTGNAHNSTFPESLKNMQSPGELLQTISNAFRGNDHPFLKNITMNDLNSLMSEYDSQSDTFGTPFLPLPKDSMRCEGMVLITSLLCSCIRNVKLPHLRRAAILLLKASALYIDDEDRLQRVIPYVIAMLLDPAAIVRCAALETLCDILPLVRDFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLSLTAYGFLMHSISLSEAGVLDELSLPQKPLISSTQTSGRMKRINGDVQLLQLRKSIAEVVQELVMGPKQTPNIRRALLQDIGKLCFFFGVRQSNDSLLPILPAFLNDRDEQLRTVFYEKIVYVCFFVGQRSVEEYLLPYIEQALSDMTEAVMVRALDCLTILCKSGFFRKRILLQMIERGFPLLCYPSEWVRRSTVSFIAASSESLGAVDSYVFLAPVIRPFLRRQPVSLASEKALLSCLKPPVSRQVFYEVLENSRSSDMLERQRKIWYSSSQSKIWEMDLLKKGIDELDSLKNWTDKQQGPGVQQTVGTAFQQPERTDCDKAEAKLRDMGAFMHNDSNIVGHRDPQCMEKLQFSGFMSPHFSGVNSLTFEKPSEGIPLYSFSMDRRGMGIPPAASDSPLQMNSLGVSSSAMPWVNPLSKSFDLASSVPAPKLFSGSFSISNGSKQFHRVVHEPDPRENDTAYVNSTFQDVGLSTNIKGTSIALEDATAQTDLSGFQSFARTSIPDSGWRPRGVLVAHLQEHRSAVSDIAVSGDQSFFVSASDDSTVKIWDSRKLEKDISFRSKLTYHLEGSRALCATMLPYSAQVIVGASDGLIHMFSIDHISRGLGNVVEKYSGIADITKKDIKEGALLSLLNCPVDNYSIMYSTQNCGIHLWDTRSNSNTWTLKATPEEGYASSLASGPCGNWFVSGSSRGVITLWDLRFLIPVNSWQYSLACPIEKMCLFLPPPNVSPSSTARPLVYVAAGCNEVSLWNAENGSCHQVLRMANYDSDAEMSDLPWALARPSSKPTSQSDPRRNVNRKYRVDDLNEPPHRLPGIRSLLPLPGGDLLTGGTDLKIRRWDHYSPDRSYCICGPNLKGMGNDDFYETKSSFGVQVVQETKRRPLTTKLTAKAILAAAATDSAGCHRDSIISLASVKLNQRLLLSSGRDGAIKVWK 1537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3129g00023 1537 SMART serkin_6 27 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3129g00023 1537 Gene3D Transferase(Phosphotransferase) domain 1 22 366 - -
Gabi3129g00023 1537 ProSiteProfiles Protein kinase domain profile. 27 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3129g00023 1537 ProSiteProfiles Trp-Asp (WD) repeats profile. 1121 1153 IPR001680 GO:0005515
Gabi3129g00023 1537 SUPERFAMILY Protein kinase-like (PK-like) 25 292 IPR011009 -
Gabi3129g00023 1537 CDD STKc_Vps15 16 303 - -
Gabi3129g00023 1537 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1504 1537 - -
Gabi3129g00023 1537 Gene3D - 465 615 IPR011989 -
Gabi3129g00023 1537 SUPERFAMILY WD40 repeat-like 1118 1535 IPR036322 GO:0005515
Gabi3129g00023 1537 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1121 1153 - -
Gabi3129g00023 1537 PANTHER PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 1 1537 IPR045162 GO:0004674|GO:0016236|GO:0045324
Gabi3129g00023 1537 MobiDBLite consensus disorder prediction 1383 1403 - -
Gabi3129g00023 1537 Pfam Protein kinase domain 29 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3129g00023 1537 Gene3D - 1226 1537 IPR015943 GO:0005515
Gabi3129g00023 1537 ProSiteProfiles HEAT repeat profile. 698 736 IPR021133 -
Gabi3129g00023 1537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Gabi3129g00023 1537 FunFam Protein kinase family protein / WD-40 repeat family protein 24 347 - -
Gabi3129g00023 1537 SUPERFAMILY ARM repeat 424 825 IPR016024 -
Gabi3129g00023 1537 Pfam WD domain, G-beta repeat 1117 1153 IPR001680 GO:0005515
Gabi3129g00023 1537 FunFam Protein kinase family protein / WD-40 repeat family protein 626 836 - -
Gabi3129g00023 1537 FunFam phosphoinositide 3-kinase regulatory subunit 4-like 476 615 - -
Gabi3129g00023 1537 Gene3D - 616 842 IPR011989 -
Gabi3129g00023 1537 Gene3D - 1104 1219 IPR015943 GO:0005515
Gabi3129g00023 1537 ProSiteProfiles Trp-Asp (WD) repeats profile. 1520 1537 IPR001680 GO:0005515
Gabi3129g00023 1537 SMART WD40_4 1261 1302 IPR001680 GO:0005515
Gabi3129g00023 1537 SMART WD40_4 1497 1537 IPR001680 GO:0005515
Gabi3129g00023 1537 SMART WD40_4 1164 1201 IPR001680 GO:0005515
Gabi3129g00023 1537 SMART WD40_4 1114 1153 IPR001680 GO:0005515
Gabi3129g00023 1537 SMART WD40_4 1409 1443 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3129g00023 Gabi-Chr3129 319708 328578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3129g00023 29 242 MAP Kinase Gene Family AT2G01450 27.679 7.16e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_Pl-Tthe Gabi3129g00023 Pkinase 1.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3129g00023 K08333 - gmx:100818467 2830.05