Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3129g00003 ATGATGCTCGGAGAGCACCATCGCGCTAATCCAACGGTCCACGTGCCTCCATGGCCAAACCTCGACGATCCAACGGCAGAGATGTACTCCCCGTACTATGCAAACGACAGCAATGCCGGCGCCGGCGATTACTCACCGTATTACATGCAGGAAGCGTTTGCGGCGCTGCAGCGTTACCTTCCGTCGAACGATTCGGACTCGGATTCGGAGGTTCCGGGTCGTGAATCGGATGCTCCGGTGGACGCTTATTCATGCGACCAATTCCGTATGTTCGAGTTTAAGGTAAGGAGGTGCGCACGTGGCAGGTCACATGACTGGACGGAGTGTCCCTATGCTCATCCCGGCGAGAAGGCTCGCCGGCGTGACCCGAGGAAGTATCACTATTCCGGCACGGCGTGCCCTGATTTCCGAAAGGGAAATTGCAAGAAAGGTGACGGGTGCGAGTTCGCGCACGGCGTGTTCGAGTGCTGGCTCCACCCTGCGCGCTACCGTACTCAGCCATGCAAGGACGGAACCAGTTGCCGGCGACGTGTGTGCTTCTTCGCTCACACGCAGGAGCAGCTCCGTGTCGTGCAGCAGCAGAGTCCCCGGAGCGCTAACTCGGCGGATTCTTATGACGGTTCTCCTCTGAGATTGGCGGTGACGTCGGTTAGTCCGTCGGAGGTGTCGCCGCCGATGTCGCCGATGGCACAATCATTGAGCCGTTCGTTGGGTTCAAGCTCCATCAACGAGATGGTGGTGGTGGCTTCGCTGCGTAATTTGCAGCTTGGGAAGGTGAAATCGTTACCCTCTAGTAGGAATGTTCCATTGGGGTCTCCGGGTTTCGGGTCACCGAGAGGATCCATTTTACGACCCGGGTTCAGTAGCCTCCCTGCTACACCGACCACCACCCAGGCACCGGGTCGTGCTGGTGTTAGCTATTTCGATCTTTGGGATCAGAGTTGTGAAGAGGAGCCTGTGATGGAGAGGGTTGAGTCTGGGAGAAATATAAGGACCAAGATGTTTGAGAAGTTGAGCAAAGAGAACTCTCTGGATGGGTCGGGTCCTGGTTCATCAGGTGGAGCTCCGGATGTTGATTGGGTTTCTGAGCTTGTGAAGTGA 1101 0.5677 MMLGEHHRANPTVHVPPWPNLDDPTAEMYSPYYANDSNAGAGDYSPYYMQEAFAALQRYLPSNDSDSDSEVPGRESDAPVDAYSCDQFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDGCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTQEQLRVVQQQSPRSANSADSYDGSPLRLAVTSVSPSEVSPPMSPMAQSLSRSLGSSSINEMVVVASLRNLQLGKVKSLPSSRNVPLGSPGFGSPRGSILRPGFSSLPATPTTTQAPGRAGVSYFDLWDQSCEEEPVMERVESGRNIRTKMFEKLSKENSLDGSGPGSSGGAPDVDWVSELVK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3129g00003 366 ProSiteProfiles Zinc finger C3H1-type profile. 128 154 IPR000571 GO:0046872
Gabi3129g00003 366 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 152 IPR000571 GO:0046872
Gabi3129g00003 366 SMART c3hfinal6 162 185 IPR000571 GO:0046872
Gabi3129g00003 366 SMART c3hfinal6 127 153 IPR000571 GO:0046872
Gabi3129g00003 366 PANTHER UNKEMPT FAMILY MEMBER 50 366 IPR045234 -
Gabi3129g00003 366 Gene3D - 122 199 - -
Gabi3129g00003 366 MobiDBLite consensus disorder prediction 215 234 - -
Gabi3129g00003 366 FunFam Zinc finger CCCH domain-containing protein 66 85 153 - -
Gabi3129g00003 366 MobiDBLite consensus disorder prediction 337 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3129g00003 Gabi-Chr3129 21080 22642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3129g00003 83 269 C2H2 Transcription Factor Family AT5G12850 51.244 3.86e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi3129g00003 zf-CCCH 0.00016 CL0537