Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3129g00002 ATGTCAAGTTCGATTGGATGCATCCTGTTGCTGATGCTTTGTGTTGTTCTTACGGTTTCAGTTCATGCACAGCAACAAACAGGCTTTCTAAGCATTGATTGTGGTGGTCCAAAGAATTTTGAGTACACAGATGATATCACTAAAATAAAGTACAACACAGATGGAGCCTACATACAAACAGGGGTTAACAAAAACATCTCCTCGGAGTATGCATATCCAAAGAATCCTAATCTGCCATATCCTCTCTCAGATCTAAGAAGTTTTCCTCAGGGAAATAGAAACTGTTACAGCTTAACAGCAGGAAGAAGAGGCAGTTTACATTTGATAAGGGCTTCCTTCTTGTATGGAAACTACGATGGGAAAAATAAGCTGCCAGAATTTGATCTCTATGTTGGTGTCAATTTCTGGTCATCAGTGAAATTTAGAAATGCTTCAGAGCAAGTTACAATGGAAATAATAAAAATGGCACAATCAGAGGTGACAAATGTTTGTCTTGTGAACAAGGGAGCAGGGATTCCTTTTATCTCAGCATTGGAACTTAGACCCCTTAATAGTTCCATTTATAATACTGAGTTTGGAGAATCTGCTTCATTGATACTTTTCAAGCGATGGGACATTGCATCACTCAATGGAAGTGGTAGATATGAAGATGATATTTATGATAGAATTTGGTCTCCCTATAATTCCTCTTCCTGGGATTCTATCAGCACTTCCTCAGCAATAAATGTCAATGGTGATGGCTATAAAGCACCATTTGAAGTCATTAGGACTGTTGCTATACCAAGGAACCATAGTGATCCTTTGGAGTTCTCCTGGACCCCAACTGATACAAGTTCGAAATTTTATGTCTACTTGTACTTTGCTGAGGTGGAGAAACTTCAAAAAACACAACTGAGAAAGTTCAACATATCCTGGAATGGATCTCCATTGTTTGAATCCTTAGTACCGCTCTACTTGTATGCAACCACTCTTTCTAATTCAAAATATCTGGTGGCAAATGAGCATCAAATTTCTATACAAAAAACAGAAGATTCAACCCTTCCACCCATTCTTAACGCAGTTGAGATTTATGTAGTAAGACCATTGGATGCACTTCCAACGTTCAAACAAGATGTTGATGCTATGATGGACATAAAAGAAAATTATAGAGTTCAAAGAAATTGGGTGGGTGATCCATGTGAGCCAAAGAACTACTCTTGGGAGGGCTTAAAATGCAACTATAGCACTTCACTTCCTCCCCGGATTATATCACTGAATCTAAGCTCGAGCAGTTTGAGTGGAATAATAACTCCAACCATTTCCAATCTCTCTTTGTTGGAATCTTTGGATTTATGTAACAATAGCTTAACTGGACCAGTGCCTCAGTTTTTGGAAGAATTGAGATCCCTAAAATATTTGAACTTAAAGGGCAACCAATTTTCAGGTTATGTCCCTACCACTCTTCTAGAAAGATCAAGGGCTGGATTACTTACACTGAGGGTGGATGAGAAAAATGTCAATGACTCAGATACGAGTAACAAAAAGAAAAAAAAGAATGCTGTTGTTCCCATAGTTGCATCGGTATCATCGATTTTAGCTCTATCGGTTATTTTCATTCTGTTTTGGAAGCTTAGAAGAAATGGACAAACAGACAAGGAGAAGAATGAGCTTAACAAAGGAGGAAGAACTATAGCATCAAAGAACTGGCAATACACATATGCTGAGGTGTTGGATATCTCCAGCAACTTTGAAACAGTCATTGGGAAAGGAGGATTTGGAATTGTATACTACGGTAAGATGAAAGATGGAAATCAAGTTGCAGTCAAGATGCTTTCTCCATCATCAACTCAAGGGCCAAAGGAATTTCAGACTGAGGCTGAGCTCTTGATGACAGTTCATCACAAAAATCTGGTATCCTTTGTTGGTTACTGTGATGACGATAACAAGATGGCACTCATATATGAGTATATGGCCAATGGTAATCTTAAAGATAATCTCTCAGATAGAAATCCACACTGCTTGAGTTGGGACAGAAGACTTCAGATAGCAATTGACGCCGCAGAGGGATTGGATTACTTACACCACGGATGCAAGCCACCTATAATACACAGGGATGTGAAGTCAGCCAACATTTTGATAAATCAAAACTTAGAAGCCAAGATAGCAGACTTTGGCCTCTCCAAAGTATTTAAGAATGATAACCGAAATGTAGAAACTGAAGTGATTCATAATAATGATAGAAACACAGGATCTGCAGTTATGGGTACGACAGGGTACCTTGATCCAGAGTACTACAGATCAGGGAACTTGAATGAGAAAAGTGACACCTATAGTTTTGGAGTCGTACTATTGGAACTAATCACAGGTCGACCTGCAGTATTAAAAGGAAAGCCAATGATGCACATACTTGAGTGGGTAAGACCTGAGCTTGAAAGAGGGGACTTGAGCAAAATTTTAGATCCAAGGCTGGAAAGAAAATTTGATGCAAGTTCTGCATGGAAAGCTATAAGAATAGCAATGGCATGCACTGCATCAACCTCCATTCAAAGACCTACAATGAGTGTCGTGTTAGCTGAGTTAAAACAGTGTTTTAAAATGGAGTCGCCTAATTATAGTGAAAATTTTGTGACCCCATATCAGATTTCTAGCGATTTTTACAGTTCATCTCAAGCATATTCCTTGGATAGTGAATCTATCACCGATCCTTCCCCAAGATAA 2697 0.3878 MSSSIGCILLLMLCVVLTVSVHAQQQTGFLSIDCGGPKNFEYTDDITKIKYNTDGAYIQTGVNKNISSEYAYPKNPNLPYPLSDLRSFPQGNRNCYSLTAGRRGSLHLIRASFLYGNYDGKNKLPEFDLYVGVNFWSSVKFRNASEQVTMEIIKMAQSEVTNVCLVNKGAGIPFISALELRPLNSSIYNTEFGESASLILFKRWDIASLNGSGRYEDDIYDRIWSPYNSSSWDSISTSSAINVNGDGYKAPFEVIRTVAIPRNHSDPLEFSWTPTDTSSKFYVYLYFAEVEKLQKTQLRKFNISWNGSPLFESLVPLYLYATTLSNSKYLVANEHQISIQKTEDSTLPPILNAVEIYVVRPLDALPTFKQDVDAMMDIKENYRVQRNWVGDPCEPKNYSWEGLKCNYSTSLPPRIISLNLSSSSLSGIITPTISNLSLLESLDLCNNSLTGPVPQFLEELRSLKYLNLKGNQFSGYVPTTLLERSRAGLLTLRVDEKNVNDSDTSNKKKKKNAVVPIVASVSSILALSVIFILFWKLRRNGQTDKEKNELNKGGRTIASKNWQYTYAEVLDISSNFETVIGKGGFGIVYYGKMKDGNQVAVKMLSPSSTQGPKEFQTEAELLMTVHHKNLVSFVGYCDDDNKMALIYEYMANGNLKDNLSDRNPHCLSWDRRLQIAIDAAEGLDYLHHGCKPPIIHRDVKSANILINQNLEAKIADFGLSKVFKNDNRNVETEVIHNNDRNTGSAVMGTTGYLDPEYYRSGNLNEKSDTYSFGVVLLELITGRPAVLKGKPMMHILEWVRPELERGDLSKILDPRLERKFDASSAWKAIRIAMACTASTSIQRPTMSVVLAELKQCFKMESPNYSENFVTPYQISSDFYSSSQAYSLDSESITDPSPR 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3129g00002 898 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Gabi3129g00002 898 ProSiteProfiles Protein kinase domain profile. 574 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3129g00002 898 Pfam Leucine rich repeat 417 473 IPR001611 GO:0005515
Gabi3129g00002 898 FunFam Leucine-rich repeat receptor-like kinase 370 501 - -
Gabi3129g00002 898 FunFam Leucine-rich repeat receptor-like protein kinase 551 649 - -
Gabi3129g00002 898 Pfam Malectin-like domain 32 358 IPR024788 -
Gabi3129g00002 898 PANTHER OS07G0107800 PROTEIN-RELATED 30 857 - -
Gabi3129g00002 898 SMART serkin_6 574 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3129g00002 898 SUPERFAMILY L domain-like 387 482 - -
Gabi3129g00002 898 Gene3D Transferase(Phosphotransferase) domain 1 651 873 - -
Gabi3129g00002 898 Pfam Protein tyrosine and serine/threonine kinase 576 851 IPR001245 GO:0004672|GO:0006468
Gabi3129g00002 898 Gene3D Phosphorylase Kinase; domain 1 580 650 - -
Gabi3129g00002 898 SUPERFAMILY Protein kinase-like (PK-like) 561 882 IPR011009 -
Gabi3129g00002 898 Gene3D Ribonuclease Inhibitor 362 487 IPR032675 -
Gabi3129g00002 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 694 706 IPR008271 GO:0004672|GO:0006468
Gabi3129g00002 898 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 650 865 - -
Gabi3129g00002 898 CDD STKc_IRAK 580 855 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3129g00002 Gabi-Chr3129 7824 12429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3129g00002 8 860 Receptor kinase-like Gene Family AT4G29180 52.474 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Gabi3129g00002 Malectin_like 3.3e-108 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3129g00002 - - gmx:100793137 1347.8