Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3127g00001 GTTGATGGTATTGCCAAAGACAGCATCACATCATTTCAATTCATCAAGGACCCTCAAACTCTTAGCTCCAATAGTGGAAACTTCACCTTGGGGTTCTTCAGCACTGACTCTACAAATCGCTATGTAGGAATTTGGTGCAAGTTCAACCTCACTGTCACATGGGTGGCTAATAGAAATCAACCATTGAATGATTCTTCTGGGGTTGTTACAATATCTGAAGATGGCAATCTTGTGGTATTGAATGGGAAGAAACAGGTTGTTTGGTCATCAAATGTGTCCAATATTGCATCCAATTCTACTTCCCAACTTTCAGATTATGGAAGCCTTCTCTTGCTGGATAACACAACAGGAAACACCATATGGGAGAGTTTCAACAATCCCTCAAATACTTTGTTACCCCGTATGAAAATTACAAGCAACAAAATAACAGGGGAGAAAGTAGAACTTACATCATGGAAAAGCCTCTCTGATCCATCCATTGGAAGCTTTTCTGCTAGTGTTGAACGCCTAAAGATTCCTGAAGTGTTCATTTGGAATAGAACTCAACCTTACTGGCGCAGTGGTCCATGGAATGGTCAAGTTTTTCTAGGGATACCAGCCATGGGAACCTCGTATCTTAGTGGTTTTCAAGTTCAAGATGATGGGAATGGAACAATTGATGTATCTTTTACAGTATATGGGATGGAACTCATGATGTATACCTTGAATTCCCAAGGCCAATTGGTGGAAAATCATTGGTATGATGAGCAATGGCTAGTAACATGGACTAGTCGCCAATCAGATTGTGATGTTTATGGTATATGTGGGGCATTTGCAAGCTGTAGTTCACAGGGCTCACCAATATGTAGCTGTTTGAAAGGGTTTGAGCCAAGGAACAAAGAGGATTGGAATAGACAAAACTGGACTAGTGGATGTGTTAAGAGCACTCCTCTGCAATGTGAAAGGACAAACAATCAAAACAAAAGTGTGGATAGTAATAAAGTAGATGGGTTTTTGACATTGCAGATGATCAAAGTTCCTGATTTTGCACAAGGATCATCTGTTACCCAAGACGCTTGCAGAAGCGGGTGCTTGGAGAATTGCTCTTGCATTGCATATGCATATGATAATGCAATTGGCTGTATGTCTTGGAATGGGGATCTAATTGATATACAGCAATTCCCAAGTGGAGGAACTGATCTATACATTCGTGTAGCCTATACAGAACTTGGTACACCTAGAGAAGGAAAAGGGCGAAACAAAAAAGTCATCATTGCAGTTACAGTGATAATAGGAACTTTCATAATTTTCACTTGTGCATATGTCATTTGGAGAAGGAAAAAGAAGAAAAGTGGATTTATTCGATTTAACAAAGGTATAACATCTGAATCTCAAGAACACGCAAATGACAAAGTAATTGGAGAATTATCACAAGCTAAGCTACAGGAGCTATTACAATTTAGCTTTGAAAAGCTTGCAACTGCCACAAACTACTTCCACTCATCCAACAAACTTGGCCAGGGTGGTTTCGGTCCAGTATACAAGGGGAAACTGCAAGATGGTAAGGAAATAGCAGTTAAAAGACTTTCAAGAGCATCTGGGCAAGGTCTAGAAGAATTCATGAATGAAGTTTTGGTAATTTCTAAGCTTCAACACCGCAATCTTGTAAAACTTCTTGGCTGCTGTATTGAAGGAGAAGAAAAGATGCTGATATATGAGTATATGCCAAATAGAAGTTTGGATGCTTATGTGTTTGATCCATCACAAAATAAACTCCTTGATTGGAGAAAGCGATTTAGCATAATAGAAGGAATTGCTAGAGGGTTGCTTTATCTTCACAGAGATTCAAGGCTAAAAATCATACATAGAGATTTGAAGGCAAGTAATATCTTGCTAGATGAGGAACTAAATCCAAAAATATCAGACTTTGGTATGGCAAGAATCTTTGGAGGGAGTGAAGATCAAGCCAATACCCAAAGGGTTGTGGGAACCTATGGCTATATGTCTCCTGAATATGCAATGCAAGGACAATTTTCTGAGAAATCAGATGTCTTTAGCTTTGGAGTTTTGCTACTTGAGATTGTTTGTGGAAGACGAAACTCAAGCTTTTATGACAATGAAAATTCCCTTACCTTCTTGGGACTTGTCTGGATACAATGGAAGGAAGGAAATGTTTTATCTTTAGTAGATCACATATATGATCCGAGCCTTGAAAACCATATTATGAGGTGCATACACATAGGACTTTTGTGTGTGCAAGAATTTGCAACAGACAGGCCCAATATGGCTGCAGTGATTTCTATGCTTAACAGTGAGATTGTGGATCTTCCTCCTCCAAGGCAACCTGCATTCATCATGTGGCAGAATATGCTTAGTTCACTATCCTCTGATGAAAGCCTTAGATTGCATTCCATCAACAATGTCAGTATTACAGACATCCATGGCAGATAG 2430 0.393 VDGIAKDSITSFQFIKDPQTLSSNSGNFTLGFFSTDSTNRYVGIWCKFNLTVTWVANRNQPLNDSSGVVTISEDGNLVVLNGKKQVVWSSNVSNIASNSTSQLSDYGSLLLLDNTTGNTIWESFNNPSNTLLPRMKITSNKITGEKVELTSWKSLSDPSIGSFSASVERLKIPEVFIWNRTQPYWRSGPWNGQVFLGIPAMGTSYLSGFQVQDDGNGTIDVSFTVYGMELMMYTLNSQGQLVENHWYDEQWLVTWTSRQSDCDVYGICGAFASCSSQGSPICSCLKGFEPRNKEDWNRQNWTSGCVKSTPLQCERTNNQNKSVDSNKVDGFLTLQMIKVPDFAQGSSVTQDACRSGCLENCSCIAYAYDNAIGCMSWNGDLIDIQQFPSGGTDLYIRVAYTELGTPREGKGRNKKVIIAVTVIIGTFIIFTCAYVIWRRKKKKSGFIRFNKGITSESQEHANDKVIGELSQAKLQELLQFSFEKLATATNYFHSSNKLGQGGFGPVYKGKLQDGKEIAVKRLSRASGQGLEEFMNEVLVISKLQHRNLVKLLGCCIEGEEKMLIYEYMPNRSLDAYVFDPSQNKLLDWRKRFSIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDEELNPKISDFGMARIFGGSEDQANTQRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIVCGRRNSSFYDNENSLTFLGLVWIQWKEGNVLSLVDHIYDPSLENHIMRCIHIGLLCVQEFATDRPNMAAVISMLNSEIVDLPPPRQPAFIMWQNMLSSLSSDESLRLHSINNVSITDIHGR 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3127g00001 809 ProSiteProfiles Protein kinase domain profile. 492 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3127g00001 809 CDD B_lectin 13 127 IPR001480 -
Gabi3127g00001 809 Pfam D-mannose binding lectin 51 153 IPR001480 -
Gabi3127g00001 809 Pfam S-locus glycoprotein domain 185 291 IPR000858 GO:0048544
Gabi3127g00001 809 CDD PAN_AP_plant 309 399 - -
Gabi3127g00001 809 Gene3D - 3 125 IPR036426 -
Gabi3127g00001 809 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 2 124 - -
Gabi3127g00001 809 SUPERFAMILY Protein kinase-like (PK-like) 476 762 IPR011009 -
Gabi3127g00001 809 Gene3D Transferase(Phosphotransferase) domain 1 568 768 - -
Gabi3127g00001 809 PIRSF SRK 2 809 IPR024171 GO:0004674
Gabi3127g00001 809 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 568 770 - -
Gabi3127g00001 809 ProSiteProfiles PAN/Apple domain profile. 313 399 IPR003609 -
Gabi3127g00001 809 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 6 753 - -
Gabi3127g00001 809 SMART ntp_6 326 398 IPR003609 -
Gabi3127g00001 809 ProSiteProfiles Bulb-type lectin domain profile. 6 124 IPR001480 -
Gabi3127g00001 809 SUPERFAMILY alpha-D-mannose-specific plant lectins 42 192 IPR036426 -
Gabi3127g00001 809 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 455 567 - -
Gabi3127g00001 809 SMART blect_4 12 127 IPR001480 -
Gabi3127g00001 809 Gene3D Phosphorylase Kinase; domain 1 451 567 - -
Gabi3127g00001 809 CDD STKc_IRAK 498 763 - -
Gabi3127g00001 809 Pfam PAN-like domain 326 384 IPR003609 -
Gabi3127g00001 809 SMART serkin_6 492 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3127g00001 809 Pfam Protein tyrosine and serine/threonine kinase 494 761 IPR001245 GO:0004672|GO:0006468
Gabi3127g00001 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3127g00001 Gabi-Chr3127 13145 22503 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3127g00001 398 779 Receptor kinase-like Gene Family AT4G05200 51.421 2.29e-130 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3127g00001 PK_Tyr_Ser-Thr 6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3127g00001 - - gmx:113002415 1114.37