Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3126g00041 ATGAGAGCTAAAAGTTTGATAAGTAAGAGGAAGTTTAGCATTAGGTGGAGATTGAGAAAGATGATCAAGTGCATGTGTTCAAGGGAACAGTTAAGAGTAGATGAAATAAGTTGCTCATCAGAGTCACTAGCAACCAGGGACTATTCAGCAAGTGGCCAATCATCCCGTCCTGGTGAAATCGAAACGAAGGTGGACAATAGAAACATTGAAGAAGCAGAGTCATCTCTTCGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCCTTGTTAGGAAGACTTGAGTATCAGAAAGGTAATATCGAAGCTGCACTTCATGTATTTGATGGAATAGATATTGCTGCTATCATTCCCAAGATGAAAATTTCTATATCTAGAAGATGTGATCTCAATAGACTCCGTTCACAAAGTGATGCAGTGCCTCCTATGTCGATGCCTGCTGTTAGTTTACTTCTTGAAGCTGTTTTTCTCAAGGCTAAATCATTGCACACTCTTGGAAGGTTTCAAGATGCTGCTAGATCATGCAAGATTATTTTAGACACTGTTGAATCTGCATTACCAGAAGGCTGGCCTGAGAACTTTGTTTCAAACTGTAAATTGCAAGAGACCCTAACAAATGCTGTAGAACTGCTCCCAGAGTTGTGGAAACTTGCTGGCTCTCCTCAAGATGTTATCTCATCATTTAGGCGAGCTTTGCTTTATAATTGGAATCTTGACATTGAAGCCAAAGCAAGGATGCAAAAGGAATTTGCTATGTTTCTTTTGTACAGTGGTTGTGAAGCAAGCCCTCCTGCTCTCCGCTCTCAGTTGGATGGTTCCTTTGTGCCAAGAAACAACATAGAAGAGGCTGTTCTTATGCTTATTATTCTGATAAGAAAATCTGTTCTTGGAAGCATTGCATGGGACCCTTCTATTATTGATCACCTTTCTTTTGCTCTAAGTGTTTCTGGGGAGTTCATGACTCTGGCTCAACAGGTTGAGGAATTGCTTCCAGAAATCATGGAGAGAAAAGAAAGATATTACACTCTAGCTCTTTGTTACTGTGGGGAAGGTCAGCATATGATTGCTTTGGATCTTTTGAGGAACTTTTTGAATAATAGAAAGAACTCAAACTGCATACCGGAATTACTTCTAGCTTCAAAAATTTGTGCAGAAAACATGGTTTGTGTTGAAGATGGAATCAAATATTCTTGTAAAGCCATTTCTCAGTTGTATGGAAAATGCATGCAAATGGAAGCTATTGCAAATTGCTTACTAGGTGTTCTACTGTCATCAAAATCAAGGTCAGTTGCTTCTGAATCAGAGAAGGTTTTGTTGCAATCTGAAGCACTGAGTGCTCTAAAAGCTGCTGAGAGAATGATGAGGGAAAGTGATCCATACATTGTCCTTCATCTTTGTCTAGAATATGCTGAGCAGAGGAAGTTGAGCATTGCTTTTTATCATGCAAAGGAACTGATTAAGCTTGAAGGTGGATCTAGTATTAGTGGATATATACTACTAGCACGGATTTTATCAGCTCAAAAAAAGTTTGTAGAGGCAGAGATTGTTGTTGATACTGCTCTAGATCAAAGTGGAAAATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAACTGCGGATTGCGCAGGGAAAATTAAAGAATGCAGTGGAGACATATACTTTTCTTCTTGCTGTTCTTCAAGTCCAAAATAAAAGTTTAGGCATTGCAAATAAGAGGAAGGGAAACCGTGACAGAAGATTGGAAATGGAAATATGGCTTGATTTGGCCAACGTCTACACAGCCTTATCACAGTGGCATGATGCTGAAGTTTGTCTTGCAAAATCTCAGGCTATTAATCCCTATTCTGCTTCTAGATGGCACTCCACAGGTTTACTTTTTGAAGCCAGAGGTCTTCATCAAGAAGCTTTGAAATCATTTAGAGAAGCATTAGATATGGAGCCAAACCATGTGCCAAGTTTGATATCCACAGCATGTGTCCTCAGACAGCTTGGTGGTCAATCATCTTCAATTGTTAGAAGCCTTCTCACTGATGCAATACGGCTTGACAGAACAAATGCATCTGCATGGTACAATCTTGGACTGCTCTTGAAAGCTGATTTAGGGACATCAACACTGGAAGCAGTTGAATGCTTTGAGGCAGCGGTTTTTCTTGAAGAATCTTCTCCCATTGAACCCTTTAGAGAACATCCAAGTCGTCGCGCTCAAACCATGCAAGTGTCAACAATGGTTGCAGATCTTGCGTGTGGTTAG 2253 0.3999 MRAKSLISKRKFSIRWRLRKMIKCMCSREQLRVDEISCSSESLATRDYSASGQSSRPGEIETKVDNRNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFDGIDIAAIIPKMKISISRRCDLNRLRSQSDAVPPMSMPAVSLLLEAVFLKAKSLHTLGRFQDAARSCKIILDTVESALPEGWPENFVSNCKLQETLTNAVELLPELWKLAGSPQDVISSFRRALLYNWNLDIEAKARMQKEFAMFLLYSGCEASPPALRSQLDGSFVPRNNIEEAVLMLIILIRKSVLGSIAWDPSIIDHLSFALSVSGEFMTLAQQVEELLPEIMERKERYYTLALCYCGEGQHMIALDLLRNFLNNRKNSNCIPELLLASKICAENMVCVEDGIKYSCKAISQLYGKCMQMEAIANCLLGVLLSSKSRSVASESEKVLLQSEALSALKAAERMMRESDPYIVLHLCLEYAEQRKLSIAFYHAKELIKLEGGSSISGYILLARILSAQKKFVEAEIVVDTALDQSGKWDQGELLRTKAKLRIAQGKLKNAVETYTFLLAVLQVQNKSLGIANKRKGNRDRRLEMEIWLDLANVYTALSQWHDAEVCLAKSQAINPYSASRWHSTGLLFEARGLHQEALKSFREALDMEPNHVPSLISTACVLRQLGGQSSSIVRSLLTDAIRLDRTNASAWYNLGLLLKADLGTSTLEAVECFEAAVFLEESSPIEPFREHPSRRAQTMQVSTMVADLACG 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3126g00041 750 Gene3D Tetratricopeptide repeat domain 582 735 IPR011990 GO:0005515
Gabi3126g00041 750 Gene3D Tetratricopeptide repeat domain 277 581 IPR011990 GO:0005515
Gabi3126g00041 750 SUPERFAMILY TPR-like 339 557 IPR011990 GO:0005515
Gabi3126g00041 750 SUPERFAMILY TPR-like 531 697 IPR011990 GO:0005515
Gabi3126g00041 750 PANTHER PROTEIN NPG1 22 728 IPR043376 -
Gabi3126g00041 750 ProSiteProfiles TPR repeat profile. 617 650 IPR019734 GO:0005515
Gabi3126g00041 750 SMART tpr_5 687 722 IPR019734 GO:0005515
Gabi3126g00041 750 SMART tpr_5 583 616 IPR019734 GO:0005515
Gabi3126g00041 750 SMART tpr_5 494 527 IPR019734 GO:0005515
Gabi3126g00041 750 SMART tpr_5 152 185 IPR019734 GO:0005515
Gabi3126g00041 750 SMART tpr_5 617 650 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3126g00041 Gabi-Chr3126 434737 438075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3126g00041 14 728 Calmodulin-binding Proteins AT4G28600 52.933 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3126g00041 K21843 - gmx:100789469 1227.23